Protein–RNA interactions for Protein: O60662

KLHL41, Kelch-like protein 41, humanhuman

Predictions only

Length 606 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL41O60662 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
KLHL41O60662 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.83■□□□□ 0.93
KLHL41O60662 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.83■□□□□ 0.93
KLHL41O60662 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.83■□□□□ 0.93
KLHL41O60662 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.83■□□□□ 0.93
KLHL41O60662 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
KLHL41O60662 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
KLHL41O60662 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.83■□□□□ 0.92
KLHL41O60662 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
KLHL41O60662 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
KLHL41O60662 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
KLHL41O60662 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.82■□□□□ 0.92
KLHL41O60662 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.82■□□□□ 0.92
KLHL41O60662 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.82■□□□□ 0.92
KLHL41O60662 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 AC126544.1-201ENST00000580842 1059 ntBASIC20.82■□□□□ 0.92
KLHL41O60662 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
KLHL41O60662 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
KLHL41O60662 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.82■□□□□ 0.92
KLHL41O60662 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.82■□□□□ 0.92
KLHL41O60662 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
KLHL41O60662 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
KLHL41O60662 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.81■□□□□ 0.92
KLHL41O60662 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.81■□□□□ 0.92
KLHL41O60662 pRNA.6-201ENST00000610482 90 ntBASIC20.81■□□□□ 0.92
KLHL41O60662 pRNA.5-201ENST00000612139 90 ntBASIC20.81■□□□□ 0.92
KLHL41O60662 pRNA.11-201ENST00000618423 90 ntBASIC20.81■□□□□ 0.92
KLHL41O60662 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.81■□□□□ 0.92
KLHL41O60662 pRNA.13-201ENST00000619112 90 ntBASIC20.81■□□□□ 0.92
KLHL41O60662 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
KLHL41O60662 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
KLHL41O60662 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
KLHL41O60662 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
KLHL41O60662 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KLHL41O60662 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
KLHL41O60662 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.8■□□□□ 0.92
KLHL41O60662 AC006455.2-201ENST00000429931 906 ntBASIC20.8■□□□□ 0.92
KLHL41O60662 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.8■□□□□ 0.92
KLHL41O60662 AL499627.2-201ENST00000606283 725 ntBASIC20.8■□□□□ 0.92
KLHL41O60662 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KLHL41O60662 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
KLHL41O60662 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
KLHL41O60662 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
KLHL41O60662 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
KLHL41O60662 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
KLHL41O60662 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.79■□□□□ 0.92
KLHL41O60662 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
KLHL41O60662 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.79■□□□□ 0.92
KLHL41O60662 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
KLHL41O60662 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
KLHL41O60662 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KLHL41O60662 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KLHL41O60662 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.78■□□□□ 0.92
KLHL41O60662 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.78■□□□□ 0.92
KLHL41O60662 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.78■□□□□ 0.92
KLHL41O60662 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
KLHL41O60662 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KLHL41O60662 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.78■□□□□ 0.92
KLHL41O60662 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
KLHL41O60662 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
KLHL41O60662 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
KLHL41O60662 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
KLHL41O60662 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
KLHL41O60662 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KLHL41O60662 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
KLHL41O60662 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KLHL41O60662 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.77■□□□□ 0.92
KLHL41O60662 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
KLHL41O60662 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.77■□□□□ 0.92
KLHL41O60662 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.77■□□□□ 0.92
KLHL41O60662 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms