Protein–RNA interactions for Protein: Q9Y2Q9

MRPS28, 28S ribosomal protein S28, mitochondrial, humanhuman

Known RBP Predictions only

Length 187 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28Q9Y2Q9 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRPS28Q9Y2Q9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRPS28Q9Y2Q9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRPS28Q9Y2Q9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRPS28Q9Y2Q9 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRPS28Q9Y2Q9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 SERBP1P1-201ENST00000396021 1160 ntBASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 SYT6-210ENST00000641643 1587 ntBASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRPS28Q9Y2Q9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.14■□□□□ 0.5
MRPS28Q9Y2Q9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.14■□□□□ 0.5
MRPS28Q9Y2Q9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 AP005435.1-201ENST00000529293 1178 ntBASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MRPS28Q9Y2Q9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 DUX4L19-201ENST00000557448 1267 ntBASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 AC136469.2-201ENST00000623944 1028 ntBASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MRPS28Q9Y2Q9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 SLC47A1P1-202ENST00000449666 945 ntBASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.12■□□□□ 0.49
MRPS28Q9Y2Q9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
MRPS28Q9Y2Q9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms