Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VCX3AQ9NNX9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VCX3AQ9NNX9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 RAP2CP1-202ENST00000605179 643 ntBASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCX3AQ9NNX9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 GABARAPL3-202ENST00000624044 1851 ntBASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VCX3AQ9NNX9 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
VCX3AQ9NNX9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VCX3AQ9NNX9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 AC007029.1-201ENST00000604183 313 ntBASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCX3AQ9NNX9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 PCDHAC2-203ENST00000615316 3011 ntBASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VCX3AQ9NNX9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCX3AQ9NNX9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms