Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CHMP1AQ9HD42 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 LINC01521-201ENST00000504184 1943 ntBASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 AC079089.2-201ENST00000531211 1277 ntBASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 AC099791.2-201ENST00000605725 427 ntBASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 HCG11-201ENST00000411553 5696 ntBASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CHMP1AQ9HD42 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 AL157384.1-201ENST00000445995 2473 ntBASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 AC087239.1-201ENST00000622671 572 ntBASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CHMP1AQ9HD42 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP1AQ9HD42 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP1AQ9HD42 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CHMP1AQ9HD42 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 AL031602.1-201ENST00000633169 911 ntBASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHMP1AQ9HD42 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.07■□□□□ 0.48
CHMP1AQ9HD42 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 AC104564.3-201ENST00000582367 638 ntBASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 Z98882.1-201ENST00000622160 2253 ntBASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CHMP1AQ9HD42 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms