Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CSMD1Q96PZ7 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.15■□□□□ 0.5
CSMD1Q96PZ7 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CSMD1Q96PZ7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.15■□□□□ 0.5
CSMD1Q96PZ7 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CSMD1Q96PZ7 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CSMD1Q96PZ7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 AC010141.2-201ENST00000452426 721 ntBASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSMD1Q96PZ7 AC010980.2-201ENST00000587099 1412 ntBASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSMD1Q96PZ7 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 CASK-201ENST00000378154 2494 ntTSL 5 BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 AC087499.1-201ENST00000418141 1075 ntBASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 AC010141.3-201ENST00000456659 717 ntBASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 DUSP8P3-201ENST00000399571 1760 ntBASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSMD1Q96PZ7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 KRT18P20-201ENST00000548986 1279 ntBASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 AC138907.5-202ENST00000569484 235 ntBASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CSMD1Q96PZ7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 AC012618.2-201ENST00000428058 849 ntBASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 AC145285.6-201ENST00000604632 637 ntBASIC18.1■□□□□ 0.49
CSMD1Q96PZ7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CSMD1Q96PZ7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CSMD1Q96PZ7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms