Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TTC28Q96AY4 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
TTC28Q96AY4 AL355472.2-201ENST00000422958 438 ntBASIC21.87■■□□□ 1.09
TTC28Q96AY4 AC124016.1-201ENST00000609552 612 ntBASIC21.87■■□□□ 1.09
TTC28Q96AY4 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
TTC28Q96AY4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.87■■□□□ 1.09
TTC28Q96AY4 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.87■■□□□ 1.09
TTC28Q96AY4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TTC28Q96AY4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
TTC28Q96AY4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TTC28Q96AY4 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TTC28Q96AY4 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TTC28Q96AY4 GPALPP1-207ENST00000611650 899 ntBASIC21.86■■□□□ 1.09
TTC28Q96AY4 AC113410.3-201ENST00000623366 203 ntBASIC21.86■■□□□ 1.09
TTC28Q96AY4 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TTC28Q96AY4 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TTC28Q96AY4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TTC28Q96AY4 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TTC28Q96AY4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TTC28Q96AY4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.86■■□□□ 1.09
TTC28Q96AY4 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.85■■□□□ 1.09
TTC28Q96AY4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.85■■□□□ 1.09
TTC28Q96AY4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.85■■□□□ 1.09
TTC28Q96AY4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TTC28Q96AY4 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TTC28Q96AY4 AC005521.1-201ENST00000393351 872 ntBASIC21.85■■□□□ 1.09
TTC28Q96AY4 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC21.85■■□□□ 1.09
TTC28Q96AY4 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
TTC28Q96AY4 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TTC28Q96AY4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.84■■□□□ 1.09
TTC28Q96AY4 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TTC28Q96AY4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TTC28Q96AY4 AC073508.3-201ENST00000619697 1419 ntBASIC21.84■■□□□ 1.09
TTC28Q96AY4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
TTC28Q96AY4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.84■■□□□ 1.09
TTC28Q96AY4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.84■■□□□ 1.09
TTC28Q96AY4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.84■■□□□ 1.09
TTC28Q96AY4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC21.84■■□□□ 1.09
TTC28Q96AY4 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
TTC28Q96AY4 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.84■■□□□ 1.09
TTC28Q96AY4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TTC28Q96AY4 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TTC28Q96AY4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TTC28Q96AY4 AC091076.1-201ENST00000610741 619 ntBASIC21.84■■□□□ 1.09
TTC28Q96AY4 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.83■■□□□ 1.09
TTC28Q96AY4 AC005363.2-201ENST00000618631 242 ntBASIC21.83■■□□□ 1.09
TTC28Q96AY4 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
TTC28Q96AY4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TTC28Q96AY4 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.83■■□□□ 1.08
TTC28Q96AY4 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TTC28Q96AY4 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TTC28Q96AY4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
TTC28Q96AY4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
TTC28Q96AY4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC21.83■■□□□ 1.08
TTC28Q96AY4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
TTC28Q96AY4 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.83■■□□□ 1.08
TTC28Q96AY4 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.83■■□□□ 1.08
TTC28Q96AY4 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.83■■□□□ 1.08
TTC28Q96AY4 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
TTC28Q96AY4 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TTC28Q96AY4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.82■■□□□ 1.08
TTC28Q96AY4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
TTC28Q96AY4 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TTC28Q96AY4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.82■■□□□ 1.08
TTC28Q96AY4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.82■■□□□ 1.08
TTC28Q96AY4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TTC28Q96AY4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.82■■□□□ 1.08
TTC28Q96AY4 AC006557.6-201ENST00000623071 864 ntBASIC21.82■■□□□ 1.08
TTC28Q96AY4 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.82■■□□□ 1.08
TTC28Q96AY4 KRT8P9-201ENST00000558927 1449 ntBASIC21.82■■□□□ 1.08
TTC28Q96AY4 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TTC28Q96AY4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC21.81■■□□□ 1.08
TTC28Q96AY4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.81■■□□□ 1.08
TTC28Q96AY4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
TTC28Q96AY4 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.81■■□□□ 1.08
TTC28Q96AY4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
TTC28Q96AY4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
TTC28Q96AY4 AC092368.3-202ENST00000574180 1591 ntBASIC21.81■■□□□ 1.08
TTC28Q96AY4 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.81■■□□□ 1.08
TTC28Q96AY4 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.81■■□□□ 1.08
TTC28Q96AY4 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TTC28Q96AY4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.81■■□□□ 1.08
TTC28Q96AY4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.81■■□□□ 1.08
TTC28Q96AY4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TTC28Q96AY4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TTC28Q96AY4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
TTC28Q96AY4 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TTC28Q96AY4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TTC28Q96AY4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TTC28Q96AY4 CRYGFP-201ENST00000418459 633 ntBASIC21.8■■□□□ 1.08
TTC28Q96AY4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.8■■□□□ 1.08
TTC28Q96AY4 DUX4L26-201ENST00000489078 1255 ntBASIC21.8■■□□□ 1.08
TTC28Q96AY4 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.8■■□□□ 1.08
TTC28Q96AY4 AC087388.1-201ENST00000571370 1112 ntBASIC21.8■■□□□ 1.08
TTC28Q96AY4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.8■■□□□ 1.08
TTC28Q96AY4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
TTC28Q96AY4 KRT16P2-201ENST00000414673 1423 ntBASIC21.8■■□□□ 1.08
TTC28Q96AY4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
TTC28Q96AY4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TTC28Q96AY4 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms