Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RAE1P78406 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RAE1P78406 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
RAE1P78406 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.1■□□□□ 0.81
RAE1P78406 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RAE1P78406 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.1■□□□□ 0.81
RAE1P78406 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.1■□□□□ 0.81
RAE1P78406 TPRG1LP1-201ENST00000598702 760 ntBASIC20.1■□□□□ 0.81
RAE1P78406 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.1■□□□□ 0.81
RAE1P78406 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.1■□□□□ 0.81
RAE1P78406 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
RAE1P78406 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RAE1P78406 AL049796.1-201ENST00000565336 1766 ntBASIC20.1■□□□□ 0.81
RAE1P78406 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.1■□□□□ 0.81
RAE1P78406 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.1■□□□□ 0.81
RAE1P78406 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.09■□□□□ 0.81
RAE1P78406 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.09■□□□□ 0.81
RAE1P78406 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.09■□□□□ 0.81
RAE1P78406 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.09■□□□□ 0.81
RAE1P78406 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.09■□□□□ 0.81
RAE1P78406 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.09■□□□□ 0.81
RAE1P78406 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
RAE1P78406 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
RAE1P78406 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RAE1P78406 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.08■□□□□ 0.81
RAE1P78406 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RAE1P78406 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.08■□□□□ 0.81
RAE1P78406 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.08■□□□□ 0.81
RAE1P78406 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.08■□□□□ 0.81
RAE1P78406 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RAE1P78406 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
RAE1P78406 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RAE1P78406 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.08■□□□□ 0.81
RAE1P78406 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.08■□□□□ 0.81
RAE1P78406 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RAE1P78406 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.08■□□□□ 0.81
RAE1P78406 AL354811.1-201ENST00000610286 706 ntBASIC20.08■□□□□ 0.81
RAE1P78406 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RAE1P78406 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RAE1P78406 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.08■□□□□ 0.8
RAE1P78406 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
RAE1P78406 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.07■□□□□ 0.8
RAE1P78406 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.07■□□□□ 0.8
RAE1P78406 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.07■□□□□ 0.8
RAE1P78406 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.07■□□□□ 0.8
RAE1P78406 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
RAE1P78406 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
RAE1P78406 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.07■□□□□ 0.8
RAE1P78406 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.07■□□□□ 0.8
RAE1P78406 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.06■□□□□ 0.8
RAE1P78406 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RAE1P78406 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RAE1P78406 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RAE1P78406 MIR638-201ENST00000385237 100 ntBASIC20.06■□□□□ 0.8
RAE1P78406 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
RAE1P78406 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.06■□□□□ 0.8
RAE1P78406 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.06■□□□□ 0.8
RAE1P78406 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RAE1P78406 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RAE1P78406 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.06■□□□□ 0.8
RAE1P78406 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
RAE1P78406 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
RAE1P78406 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.06■□□□□ 0.8
RAE1P78406 MIR6084-201ENST00000622012 110 ntBASIC20.06■□□□□ 0.8
RAE1P78406 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RAE1P78406 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
RAE1P78406 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RAE1P78406 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.05■□□□□ 0.8
RAE1P78406 AC105265.2-201ENST00000467189 838 ntBASIC20.05■□□□□ 0.8
RAE1P78406 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.05■□□□□ 0.8
RAE1P78406 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.05■□□□□ 0.8
RAE1P78406 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RAE1P78406 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RAE1P78406 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RAE1P78406 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
RAE1P78406 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RAE1P78406 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms