Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PTPN4P29074 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN4P29074 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.11■□□□□ 0.97
PTPN4P29074 AC126544.1-201ENST00000580842 1059 ntBASIC21.11■□□□□ 0.97
PTPN4P29074 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.11■□□□□ 0.97
PTPN4P29074 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN4P29074 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.11■□□□□ 0.97
PTPN4P29074 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PTPN4P29074 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.1■□□□□ 0.97
PTPN4P29074 LINC01006-201ENST00000333319 2292 ntBASIC21.1■□□□□ 0.97
PTPN4P29074 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
PTPN4P29074 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN4P29074 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN4P29074 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN4P29074 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN4P29074 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PTPN4P29074 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
PTPN4P29074 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN4P29074 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
PTPN4P29074 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN4P29074 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.09■□□□□ 0.97
PTPN4P29074 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.09■□□□□ 0.97
PTPN4P29074 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN4P29074 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.09■□□□□ 0.97
PTPN4P29074 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN4P29074 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PTPN4P29074 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.08■□□□□ 0.97
PTPN4P29074 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
PTPN4P29074 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
PTPN4P29074 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PTPN4P29074 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.08■□□□□ 0.97
PTPN4P29074 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
PTPN4P29074 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.08■□□□□ 0.96
PTPN4P29074 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.08■□□□□ 0.96
PTPN4P29074 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.08■□□□□ 0.96
PTPN4P29074 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.08■□□□□ 0.96
PTPN4P29074 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.07■□□□□ 0.96
PTPN4P29074 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN4P29074 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN4P29074 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN4P29074 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.07■□□□□ 0.96
PTPN4P29074 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.07■□□□□ 0.96
PTPN4P29074 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
PTPN4P29074 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.07■□□□□ 0.96
PTPN4P29074 AL162430.1-201ENST00000480705 870 ntBASIC21.07■□□□□ 0.96
PTPN4P29074 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN4P29074 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN4P29074 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN4P29074 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.07■□□□□ 0.96
PTPN4P29074 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
PTPN4P29074 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN4P29074 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PTPN4P29074 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
PTPN4P29074 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
PTPN4P29074 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN4P29074 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.06■□□□□ 0.96
PTPN4P29074 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN4P29074 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.06■□□□□ 0.96
PTPN4P29074 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN4P29074 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.06■□□□□ 0.96
PTPN4P29074 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN4P29074 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN4P29074 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.06■□□□□ 0.96
PTPN4P29074 LINC01960-201ENST00000563759 1884 ntBASIC21.06■□□□□ 0.96
PTPN4P29074 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PTPN4P29074 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
PTPN4P29074 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN4P29074 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN4P29074 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN4P29074 SLC47A1P1-202ENST00000449666 945 ntBASIC21.05■□□□□ 0.96
PTPN4P29074 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN4P29074 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.05■□□□□ 0.96
PTPN4P29074 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN4P29074 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PTPN4P29074 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN4P29074 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PTPN4P29074 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
PTPN4P29074 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN4P29074 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN4P29074 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN4P29074 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
PTPN4P29074 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN4P29074 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
PTPN4P29074 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN4P29074 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms