Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SGCEO43556 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SGCEO43556 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SGCEO43556 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SGCEO43556 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.63■□□□□ 0.57
SGCEO43556 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.63■□□□□ 0.57
SGCEO43556 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.63■□□□□ 0.57
SGCEO43556 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
SGCEO43556 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SGCEO43556 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.63■□□□□ 0.57
SGCEO43556 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.63■□□□□ 0.57
SGCEO43556 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.63■□□□□ 0.57
SGCEO43556 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SGCEO43556 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SGCEO43556 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SGCEO43556 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SGCEO43556 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SGCEO43556 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
SGCEO43556 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
SGCEO43556 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.62■□□□□ 0.57
SGCEO43556 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.62■□□□□ 0.57
SGCEO43556 AC105265.2-201ENST00000467189 838 ntBASIC18.62■□□□□ 0.57
SGCEO43556 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.62■□□□□ 0.57
SGCEO43556 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.62■□□□□ 0.57
SGCEO43556 AC012414.1-201ENST00000556676 535 ntBASIC18.62■□□□□ 0.57
SGCEO43556 AL354811.1-201ENST00000610286 706 ntBASIC18.62■□□□□ 0.57
SGCEO43556 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.62■□□□□ 0.57
SGCEO43556 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.62■□□□□ 0.57
SGCEO43556 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.62■□□□□ 0.57
SGCEO43556 AC003102.1-202ENST00000563394 1796 ntBASIC18.62■□□□□ 0.57
SGCEO43556 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.62■□□□□ 0.57
SGCEO43556 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SGCEO43556 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SGCEO43556 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SGCEO43556 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SGCEO43556 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SGCEO43556 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
SGCEO43556 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.61■□□□□ 0.57
SGCEO43556 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SGCEO43556 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SGCEO43556 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SGCEO43556 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.6■□□□□ 0.57
SGCEO43556 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SGCEO43556 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.6■□□□□ 0.57
SGCEO43556 AL358852.1-201ENST00000623174 1268 ntBASIC18.6■□□□□ 0.57
SGCEO43556 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SGCEO43556 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.6■□□□□ 0.57
SGCEO43556 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SGCEO43556 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.59■□□□□ 0.57
SGCEO43556 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC18.59■□□□□ 0.57
SGCEO43556 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.59■□□□□ 0.57
SGCEO43556 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SGCEO43556 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SGCEO43556 IRS3P-201ENST00000223076 1006 ntBASIC18.59■□□□□ 0.57
SGCEO43556 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.59■□□□□ 0.57
SGCEO43556 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.59■□□□□ 0.57
SGCEO43556 AC005224.4-201ENST00000583262 1652 ntBASIC18.59■□□□□ 0.57
SGCEO43556 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SGCEO43556 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SGCEO43556 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SGCEO43556 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SGCEO43556 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SGCEO43556 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.59■□□□□ 0.57
SGCEO43556 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SGCEO43556 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SGCEO43556 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SGCEO43556 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.58■□□□□ 0.57
SGCEO43556 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SGCEO43556 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SGCEO43556 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SGCEO43556 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SGCEO43556 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.58■□□□□ 0.56
SGCEO43556 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.58■□□□□ 0.56
SGCEO43556 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SGCEO43556 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SGCEO43556 AC007375.3-201ENST00000600936 2314 ntBASIC18.58■□□□□ 0.56
SGCEO43556 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SGCEO43556 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.58■□□□□ 0.56
SGCEO43556 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SGCEO43556 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms