Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.21■□□□□ 0.99
TREX1Q9NSU2 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
TREX1Q9NSU2 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.2■□□□□ 0.99
TREX1Q9NSU2 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TREX1Q9NSU2 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 MIR638-201ENST00000385237 100 ntBASIC21.19■□□□□ 0.98
TREX1Q9NSU2 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 TPRG1LP1-201ENST00000598702 760 ntBASIC21.19■□□□□ 0.98
TREX1Q9NSU2 AL354811.1-201ENST00000610286 706 ntBASIC21.19■□□□□ 0.98
TREX1Q9NSU2 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.19■□□□□ 0.98
TREX1Q9NSU2 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TREX1Q9NSU2 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 AL358852.1-201ENST00000623174 1268 ntBASIC21.17■□□□□ 0.98
TREX1Q9NSU2 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TREX1Q9NSU2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TREX1Q9NSU2 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TREX1Q9NSU2 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TREX1Q9NSU2 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TREX1Q9NSU2 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TREX1Q9NSU2 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.15■□□□□ 0.98
TREX1Q9NSU2 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TREX1Q9NSU2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TREX1Q9NSU2 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TREX1Q9NSU2 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms