Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLRN3Q8NCR9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CLRN3Q8NCR9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 FZD10-202ENST00000539839 3282 ntBASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 AL353803.4-201ENST00000565882 1934 ntBASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLRN3Q8NCR9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
CLRN3Q8NCR9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC16.89■□□□□ 0.3
CLRN3Q8NCR9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
CLRN3Q8NCR9 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CLRN3Q8NCR9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CLRN3Q8NCR9 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
CLRN3Q8NCR9 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.89■□□□□ 0.29
CLRN3Q8NCR9 AC144652.1-201ENST00000609974 1624 ntBASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 AP005212.1-201ENST00000581547 1997 ntBASIC16.88■□□□□ 0.29
CLRN3Q8NCR9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms