Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.98■□□□□ 0.47
PDLIM4P50479 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.98■□□□□ 0.47
PDLIM4P50479 KRT18P20-201ENST00000548986 1279 ntBASIC17.98■□□□□ 0.47
PDLIM4P50479 DUX4L16-201ENST00000555130 1264 ntBASIC17.98■□□□□ 0.47
PDLIM4P50479 AC138907.5-202ENST00000569484 235 ntBASIC17.98■□□□□ 0.47
PDLIM4P50479 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.98■□□□□ 0.47
PDLIM4P50479 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PDLIM4P50479 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.98■□□□□ 0.47
PDLIM4P50479 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PDLIM4P50479 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.98■□□□□ 0.47
PDLIM4P50479 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM4P50479 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM4P50479 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.97■□□□□ 0.47
PDLIM4P50479 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.97■□□□□ 0.47
PDLIM4P50479 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM4P50479 EP400NL-214ENST00000641289 2402 ntBASIC17.97■□□□□ 0.47
PDLIM4P50479 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.97■□□□□ 0.47
PDLIM4P50479 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM4P50479 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.97■□□□□ 0.47
PDLIM4P50479 AC010141.2-201ENST00000452426 721 ntBASIC17.97■□□□□ 0.47
PDLIM4P50479 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.97■□□□□ 0.47
PDLIM4P50479 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.97■□□□□ 0.47
PDLIM4P50479 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.97■□□□□ 0.47
PDLIM4P50479 AC005181.1-201ENST00000604782 1256 ntBASIC17.97■□□□□ 0.47
PDLIM4P50479 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM4P50479 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM4P50479 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PDLIM4P50479 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.97■□□□□ 0.47
PDLIM4P50479 C9orf163-202ENST00000624034 2573 ntBASIC17.96■□□□□ 0.47
PDLIM4P50479 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
PDLIM4P50479 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PDLIM4P50479 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.96■□□□□ 0.47
PDLIM4P50479 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.96■□□□□ 0.47
PDLIM4P50479 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.96■□□□□ 0.47
PDLIM4P50479 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
PDLIM4P50479 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.96■□□□□ 0.47
PDLIM4P50479 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PDLIM4P50479 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC17.96■□□□□ 0.47
PDLIM4P50479 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.96■□□□□ 0.46
PDLIM4P50479 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PDLIM4P50479 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM4P50479 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM4P50479 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM4P50479 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM4P50479 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.95■□□□□ 0.46
PDLIM4P50479 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM4P50479 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PDLIM4P50479 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PDLIM4P50479 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM4P50479 AC137767.1-201ENST00000602918 1920 ntBASIC17.94■□□□□ 0.46
PDLIM4P50479 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM4P50479 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM4P50479 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.94■□□□□ 0.46
PDLIM4P50479 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.94■□□□□ 0.46
PDLIM4P50479 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.94■□□□□ 0.46
PDLIM4P50479 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM4P50479 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PDLIM4P50479 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PDLIM4P50479 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
PDLIM4P50479 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.94■□□□□ 0.46
PDLIM4P50479 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
PDLIM4P50479 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.93■□□□□ 0.46
PDLIM4P50479 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 LINC00526-201ENST00000581067 1875 ntBASIC17.93■□□□□ 0.46
PDLIM4P50479 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
PDLIM4P50479 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC17.93■□□□□ 0.46
PDLIM4P50479 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 SLC29A4P1-201ENST00000398760 971 ntBASIC17.93■□□□□ 0.46
PDLIM4P50479 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.93■□□□□ 0.46
PDLIM4P50479 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 AC083906.2-201ENST00000511578 360 ntBASIC17.93■□□□□ 0.46
PDLIM4P50479 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
PDLIM4P50479 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
PDLIM4P50479 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM4P50479 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.93■□□□□ 0.46
PDLIM4P50479 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms