Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.61■□□□□ 0.57
SOX2P48431 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.61■□□□□ 0.57
SOX2P48431 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.61■□□□□ 0.57
SOX2P48431 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.61■□□□□ 0.57
SOX2P48431 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SOX2P48431 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX2P48431 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX2P48431 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.6■□□□□ 0.57
SOX2P48431 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.6■□□□□ 0.57
SOX2P48431 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX2P48431 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.6■□□□□ 0.57
SOX2P48431 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX2P48431 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.6■□□□□ 0.57
SOX2P48431 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX2P48431 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SOX2P48431 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX2P48431 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.6■□□□□ 0.57
SOX2P48431 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SOX2P48431 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.6■□□□□ 0.57
SOX2P48431 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX2P48431 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX2P48431 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SOX2P48431 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX2P48431 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.59■□□□□ 0.57
SOX2P48431 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.59■□□□□ 0.57
SOX2P48431 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SOX2P48431 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX2P48431 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.59■□□□□ 0.57
SOX2P48431 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX2P48431 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SOX2P48431 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
SOX2P48431 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.59■□□□□ 0.57
SOX2P48431 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.59■□□□□ 0.57
SOX2P48431 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX2P48431 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SOX2P48431 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SOX2P48431 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SOX2P48431 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX2P48431 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
SOX2P48431 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.59■□□□□ 0.57
SOX2P48431 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX2P48431 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX2P48431 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.58■□□□□ 0.57
SOX2P48431 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX2P48431 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX2P48431 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX2P48431 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 AC087239.1-201ENST00000622671 572 ntBASIC18.58■□□□□ 0.56
SOX2P48431 AC068587.7-201ENST00000641602 218 ntBASIC18.58■□□□□ 0.56
SOX2P48431 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SOX2P48431 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 LINC01521-201ENST00000504184 1943 ntBASIC18.58■□□□□ 0.56
SOX2P48431 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.58■□□□□ 0.56
SOX2P48431 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX2P48431 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
SOX2P48431 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.57■□□□□ 0.56
SOX2P48431 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.57■□□□□ 0.56
SOX2P48431 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.57■□□□□ 0.56
SOX2P48431 KRT16P3-201ENST00000439127 1283 ntBASIC18.57■□□□□ 0.56
SOX2P48431 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.57■□□□□ 0.56
SOX2P48431 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.57■□□□□ 0.56
SOX2P48431 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.57■□□□□ 0.56
SOX2P48431 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.57■□□□□ 0.56
SOX2P48431 MIR3181-201ENST00000578512 73 ntBASIC18.57■□□□□ 0.56
SOX2P48431 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SOX2P48431 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.57■□□□□ 0.56
SOX2P48431 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SOX2P48431 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.57■□□□□ 0.56
SOX2P48431 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX2P48431 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX2P48431 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX2P48431 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX2P48431 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.56■□□□□ 0.56
SOX2P48431 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.56■□□□□ 0.56
SOX2P48431 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX2P48431 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms