Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.75■□□□□ 0.91
SHMT2P34897 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHMT2P34897 AL162430.1-201ENST00000480705 870 ntBASIC20.75■□□□□ 0.91
SHMT2P34897 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SHMT2P34897 AC092053.2-201ENST00000640557 1818 ntBASIC20.75■□□□□ 0.91
SHMT2P34897 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.75■□□□□ 0.91
SHMT2P34897 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHMT2P34897 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.75■□□□□ 0.91
SHMT2P34897 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.75■□□□□ 0.91
SHMT2P34897 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SHMT2P34897 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.74■□□□□ 0.91
SHMT2P34897 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SHMT2P34897 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHMT2P34897 AC055733.4-201ENST00000638462 1354 ntBASIC20.74■□□□□ 0.91
SHMT2P34897 AP006587.3-201ENST00000525742 1516 ntBASIC20.74■□□□□ 0.91
SHMT2P34897 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHMT2P34897 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHMT2P34897 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.74■□□□□ 0.91
SHMT2P34897 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SHMT2P34897 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHMT2P34897 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.74■□□□□ 0.91
SHMT2P34897 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHMT2P34897 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
SHMT2P34897 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHMT2P34897 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SHMT2P34897 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.73■□□□□ 0.91
SHMT2P34897 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.73■□□□□ 0.91
SHMT2P34897 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.73■□□□□ 0.91
SHMT2P34897 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.73■□□□□ 0.91
SHMT2P34897 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
SHMT2P34897 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.73■□□□□ 0.91
SHMT2P34897 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SHMT2P34897 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.73■□□□□ 0.91
SHMT2P34897 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.73■□□□□ 0.91
SHMT2P34897 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.73■□□□□ 0.91
SHMT2P34897 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHMT2P34897 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHMT2P34897 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHMT2P34897 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SHMT2P34897 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHMT2P34897 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SHMT2P34897 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SHMT2P34897 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHMT2P34897 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.72■□□□□ 0.91
SHMT2P34897 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.72■□□□□ 0.91
SHMT2P34897 KRT18P5-201ENST00000436075 1291 ntBASIC20.72■□□□□ 0.91
SHMT2P34897 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.72■□□□□ 0.91
SHMT2P34897 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHMT2P34897 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.72■□□□□ 0.91
SHMT2P34897 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.72■□□□□ 0.91
SHMT2P34897 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SHMT2P34897 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHMT2P34897 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.72■□□□□ 0.91
SHMT2P34897 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHMT2P34897 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHMT2P34897 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SHMT2P34897 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.71■□□□□ 0.91
SHMT2P34897 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.71■□□□□ 0.91
SHMT2P34897 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.71■□□□□ 0.91
SHMT2P34897 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.71■□□□□ 0.91
SHMT2P34897 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.71■□□□□ 0.91
SHMT2P34897 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.71■□□□□ 0.91
SHMT2P34897 NTF6G-201ENST00000591094 616 ntBASIC20.71■□□□□ 0.91
SHMT2P34897 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SHMT2P34897 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.71■□□□□ 0.91
SHMT2P34897 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHMT2P34897 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.7■□□□□ 0.91
SHMT2P34897 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.7■□□□□ 0.9
SHMT2P34897 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SHMT2P34897 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHMT2P34897 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHMT2P34897 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SHMT2P34897 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.7■□□□□ 0.9
SHMT2P34897 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.7■□□□□ 0.9
SHMT2P34897 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.7■□□□□ 0.9
SHMT2P34897 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SHMT2P34897 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.7■□□□□ 0.9
SHMT2P34897 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.7■□□□□ 0.9
SHMT2P34897 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.7■□□□□ 0.9
SHMT2P34897 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHMT2P34897 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms