Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HLA-L-209ENST00000420110 1011 ntBASIC19.42■□□□□ 0.7
MSX1P28360 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.42■□□□□ 0.7
MSX1P28360 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.42■□□□□ 0.7
MSX1P28360 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.42■□□□□ 0.7
MSX1P28360 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.42■□□□□ 0.7
MSX1P28360 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.42■□□□□ 0.7
MSX1P28360 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.42■□□□□ 0.7
MSX1P28360 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX1P28360 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
MSX1P28360 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
MSX1P28360 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
MSX1P28360 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX1P28360 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.41■□□□□ 0.7
MSX1P28360 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.41■□□□□ 0.7
MSX1P28360 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.41■□□□□ 0.7
MSX1P28360 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX1P28360 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSX1P28360 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX1P28360 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.41■□□□□ 0.7
MSX1P28360 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSX1P28360 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
MSX1P28360 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.4■□□□□ 0.7
MSX1P28360 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
MSX1P28360 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.4■□□□□ 0.7
MSX1P28360 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.4■□□□□ 0.7
MSX1P28360 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.4■□□□□ 0.7
MSX1P28360 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 AC006015.1-201ENST00000429970 570 ntBASIC19.4■□□□□ 0.7
MSX1P28360 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.4■□□□□ 0.7
MSX1P28360 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSX1P28360 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
MSX1P28360 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MSX1P28360 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
MSX1P28360 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
MSX1P28360 AC079140.4-201ENST00000507448 529 ntBASIC19.39■□□□□ 0.69
MSX1P28360 AC080038.1-201ENST00000611274 1154 ntBASIC19.39■□□□□ 0.69
MSX1P28360 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
MSX1P28360 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.39■□□□□ 0.69
MSX1P28360 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX1P28360 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.39■□□□□ 0.69
MSX1P28360 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.39■□□□□ 0.69
MSX1P28360 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX1P28360 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX1P28360 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX1P28360 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX1P28360 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSX1P28360 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX1P28360 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
MSX1P28360 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSX1P28360 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.39■□□□□ 0.69
MSX1P28360 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSX1P28360 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX1P28360 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
MSX1P28360 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.38■□□□□ 0.69
MSX1P28360 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSX1P28360 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX1P28360 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.38■□□□□ 0.69
MSX1P28360 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.38■□□□□ 0.69
MSX1P28360 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
MSX1P28360 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX1P28360 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX1P28360 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSX1P28360 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.37■□□□□ 0.69
MSX1P28360 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 AC016769.1-201ENST00000409132 1010 ntBASIC19.37■□□□□ 0.69
MSX1P28360 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
MSX1P28360 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 AC137761.2-201ENST00000561729 223 ntBASIC19.37■□□□□ 0.69
MSX1P28360 AC145350.3-201ENST00000569033 163 ntBASIC19.37■□□□□ 0.69
MSX1P28360 KRT18P61-201ENST00000585825 1298 ntBASIC19.37■□□□□ 0.69
MSX1P28360 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.37■□□□□ 0.69
MSX1P28360 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
MSX1P28360 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSX1P28360 AC003102.1-202ENST00000563394 1796 ntBASIC19.37■□□□□ 0.69
MSX1P28360 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.36■□□□□ 0.69
MSX1P28360 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.36■□□□□ 0.69
MSX1P28360 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.36■□□□□ 0.69
MSX1P28360 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms