Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SNX3O60493 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.92■□□□□ 0.94
SNX3O60493 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.92■□□□□ 0.94
SNX3O60493 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.92■□□□□ 0.94
SNX3O60493 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.92■□□□□ 0.94
SNX3O60493 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNX3O60493 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SNX3O60493 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SNX3O60493 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.91■□□□□ 0.94
SNX3O60493 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SNX3O60493 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SNX3O60493 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.91■□□□□ 0.94
SNX3O60493 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
SNX3O60493 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC20.91■□□□□ 0.94
SNX3O60493 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SNX3O60493 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.91■□□□□ 0.94
SNX3O60493 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.91■□□□□ 0.94
SNX3O60493 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.91■□□□□ 0.94
SNX3O60493 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
SNX3O60493 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.9■□□□□ 0.94
SNX3O60493 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SNX3O60493 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SNX3O60493 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.9■□□□□ 0.94
SNX3O60493 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.9■□□□□ 0.94
SNX3O60493 AC005703.6-201ENST00000623265 1329 ntBASIC20.9■□□□□ 0.94
SNX3O60493 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SNX3O60493 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.9■□□□□ 0.94
SNX3O60493 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.9■□□□□ 0.94
SNX3O60493 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNX3O60493 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.89■□□□□ 0.94
SNX3O60493 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SNX3O60493 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
SNX3O60493 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SNX3O60493 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.89■□□□□ 0.94
SNX3O60493 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.89■□□□□ 0.94
SNX3O60493 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX3O60493 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SNX3O60493 PLK5-205ENST00000642079 1969 ntBASIC20.89■□□□□ 0.93
SNX3O60493 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.89■□□□□ 0.93
SNX3O60493 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX3O60493 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNX3O60493 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX3O60493 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.88■□□□□ 0.93
SNX3O60493 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SNX3O60493 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SNX3O60493 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX3O60493 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SNX3O60493 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.88■□□□□ 0.93
SNX3O60493 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.88■□□□□ 0.93
SNX3O60493 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.88■□□□□ 0.93
SNX3O60493 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.88■□□□□ 0.93
SNX3O60493 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX3O60493 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNX3O60493 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 AC027702.1-201ENST00000563810 1770 ntBASIC20.87■□□□□ 0.93
SNX3O60493 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.87■□□□□ 0.93
SNX3O60493 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.87■□□□□ 0.93
SNX3O60493 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.87■□□□□ 0.93
SNX3O60493 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.87■□□□□ 0.93
SNX3O60493 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNX3O60493 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SNX3O60493 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.87■□□□□ 0.93
SNX3O60493 OR7E47P-201ENST00000546390 1422 ntBASIC20.87■□□□□ 0.93
SNX3O60493 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
SNX3O60493 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.86■□□□□ 0.93
SNX3O60493 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms