Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
HMGN4O00479 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.75■□□□□ 0.75
HMGN4O00479 TSPY26P-201ENST00000476365 1326 ntBASIC19.75■□□□□ 0.75
HMGN4O00479 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.75■□□□□ 0.75
HMGN4O00479 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
HMGN4O00479 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
HMGN4O00479 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 EDA-201ENST00000338901 1233 ntBASIC19.74■□□□□ 0.75
HMGN4O00479 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.74■□□□□ 0.75
HMGN4O00479 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.74■□□□□ 0.75
HMGN4O00479 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGN4O00479 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.74■□□□□ 0.75
HMGN4O00479 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.74■□□□□ 0.75
HMGN4O00479 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.74■□□□□ 0.75
HMGN4O00479 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.74■□□□□ 0.75
HMGN4O00479 AC110285.6-201ENST00000617652 491 ntBASIC19.74■□□□□ 0.75
HMGN4O00479 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.74■□□□□ 0.75
HMGN4O00479 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HMGN4O00479 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HMGN4O00479 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
HMGN4O00479 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGN4O00479 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
HMGN4O00479 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGN4O00479 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HMGN4O00479 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.73■□□□□ 0.75
HMGN4O00479 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
HMGN4O00479 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGN4O00479 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.73■□□□□ 0.75
HMGN4O00479 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
HMGN4O00479 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.73■□□□□ 0.75
HMGN4O00479 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HMGN4O00479 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.72■□□□□ 0.75
HMGN4O00479 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGN4O00479 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
HMGN4O00479 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGN4O00479 AC105233.4-201ENST00000642045 216 ntBASIC19.72■□□□□ 0.75
HMGN4O00479 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.72■□□□□ 0.75
HMGN4O00479 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HMGN4O00479 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HMGN4O00479 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.71■□□□□ 0.75
HMGN4O00479 AC009237.3-201ENST00000393279 1427 ntBASIC19.71■□□□□ 0.75
HMGN4O00479 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.71■□□□□ 0.75
HMGN4O00479 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 AL355001.2-201ENST00000620617 1191 ntBASIC19.71■□□□□ 0.75
HMGN4O00479 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
HMGN4O00479 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HMGN4O00479 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.7■□□□□ 0.74
HMGN4O00479 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HMGN4O00479 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGN4O00479 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGN4O00479 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGN4O00479 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGN4O00479 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
HMGN4O00479 MIR939-201ENST00000401314 82 ntBASIC19.7■□□□□ 0.74
HMGN4O00479 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.7■□□□□ 0.74
HMGN4O00479 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGN4O00479 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HMGN4O00479 AL049796.1-201ENST00000565336 1766 ntBASIC19.7■□□□□ 0.74
HMGN4O00479 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms