Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 AC006077.2-201ENST00000623591 457 ntBASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 ANOS2P-203ENST00000472227 1816 ntBASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 LTB4R2-202ENST00000528054 3092 ntBASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
CHKB-CPT1BH3BT56 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 TK2-221ENST00000620035 5060 ntTSL 2 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC11.84□□□□□ -0.51
CHKB-CPT1BH3BT56 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.51
CHKB-CPT1BH3BT56 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC11.83□□□□□ -0.51
CHKB-CPT1BH3BT56 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
CHKB-CPT1BH3BT56 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.51
CHKB-CPT1BH3BT56 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
CHKB-CPT1BH3BT56 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CHKB-CPT1BH3BT56 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms