Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
LIMD2Q9BT23 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LIMD2Q9BT23 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC12.59□□□□□ -0.39
LIMD2Q9BT23 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LIMD2Q9BT23 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LIMD2Q9BT23 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
LIMD2Q9BT23 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LIMD2Q9BT23 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LIMD2Q9BT23 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
LIMD2Q9BT23 RARG-204ENST00000543726 1779 ntTSL 2 BASIC12.58□□□□□ -0.39
LIMD2Q9BT23 AL391422.3-201ENST00000603791 2761 ntBASIC12.58□□□□□ -0.39
LIMD2Q9BT23 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
LIMD2Q9BT23 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 RBM38-205ENST00000440234 686 ntTSL 2 BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 OR2I1P-207ENST00000453522 948 ntBASIC12.58□□□□□ -0.4
LIMD2Q9BT23 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 TRIR-202ENST00000588213 841 ntTSL 3 BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 AL137060.1-201ENST00000618151 2648 ntBASIC12.58□□□□□ -0.4
LIMD2Q9BT23 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LIMD2Q9BT23 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 SF1-220ENST00000626028 704 ntTSL 2 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LIMD2Q9BT23 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 CA15P2-201ENST00000611168 834 ntBASIC12.56□□□□□ -0.4
LIMD2Q9BT23 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LIMD2Q9BT23 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
LIMD2Q9BT23 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms