Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LRCH3Q96II8 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.19■■□□□ 1.3
LRCH3Q96II8 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
LRCH3Q96II8 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
LRCH3Q96II8 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.19■■□□□ 1.3
LRCH3Q96II8 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.18■■□□□ 1.3
LRCH3Q96II8 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
LRCH3Q96II8 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.18■■□□□ 1.3
LRCH3Q96II8 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
LRCH3Q96II8 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC23.18■■□□□ 1.3
LRCH3Q96II8 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
LRCH3Q96II8 AC097493.4-201ENST00000641197 219 ntBASIC23.18■■□□□ 1.3
LRCH3Q96II8 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
LRCH3Q96II8 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC23.18■■□□□ 1.3
LRCH3Q96II8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
LRCH3Q96II8 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
LRCH3Q96II8 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.17■■□□□ 1.3
LRCH3Q96II8 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC23.17■■□□□ 1.3
LRCH3Q96II8 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
LRCH3Q96II8 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 TSPY15P-201ENST00000457163 923 ntBASIC23.17■■□□□ 1.3
LRCH3Q96II8 RN7SL850P-201ENST00000579959 291 ntBASIC23.17■■□□□ 1.3
LRCH3Q96II8 AC012306.2-201ENST00000609350 630 ntBASIC23.17■■□□□ 1.3
LRCH3Q96II8 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.17■■□□□ 1.3
LRCH3Q96II8 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
LRCH3Q96II8 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRCH3Q96II8 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 RN7SL471P-201ENST00000580476 299 ntBASIC23.16■■□□□ 1.3
LRCH3Q96II8 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LRCH3Q96II8 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRCH3Q96II8 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRCH3Q96II8 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
LRCH3Q96II8 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.16■■□□□ 1.3
LRCH3Q96II8 AC138932.3-201ENST00000567634 1902 ntBASIC23.16■■□□□ 1.3
LRCH3Q96II8 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRCH3Q96II8 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
LRCH3Q96II8 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
LRCH3Q96II8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC23.15■■□□□ 1.3
LRCH3Q96II8 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRCH3Q96II8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRCH3Q96II8 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.15■■□□□ 1.3
LRCH3Q96II8 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRCH3Q96II8 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LRCH3Q96II8 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LRCH3Q96II8 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
LRCH3Q96II8 AC022211.4-201ENST00000625094 2161 ntBASIC23.14■■□□□ 1.3
LRCH3Q96II8 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
LRCH3Q96II8 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
LRCH3Q96II8 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
LRCH3Q96II8 AC142381.3-201ENST00000568208 1670 ntBASIC23.14■■□□□ 1.29
LRCH3Q96II8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
LRCH3Q96II8 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.14■■□□□ 1.29
LRCH3Q96II8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC23.14■■□□□ 1.29
LRCH3Q96II8 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC23.14■■□□□ 1.29
LRCH3Q96II8 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRCH3Q96II8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRCH3Q96II8 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC23.14■■□□□ 1.29
LRCH3Q96II8 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LRCH3Q96II8 KRT17P2-201ENST00000300992 1314 ntBASIC23.13■■□□□ 1.29
LRCH3Q96II8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRCH3Q96II8 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
LRCH3Q96II8 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC23.13■■□□□ 1.29
LRCH3Q96II8 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
LRCH3Q96II8 AC233263.1-201ENST00000578059 224 ntBASIC23.13■■□□□ 1.29
LRCH3Q96II8 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRCH3Q96II8 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LRCH3Q96II8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
LRCH3Q96II8 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.12■■□□□ 1.29
LRCH3Q96II8 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRCH3Q96II8 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRCH3Q96II8 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRCH3Q96II8 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRCH3Q96II8 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.12■■□□□ 1.29
LRCH3Q96II8 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRCH3Q96II8 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LRCH3Q96II8 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms