Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CPNE4Q96A23 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CPNE4Q96A23 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.08■□□□□ 0.64
CPNE4Q96A23 KRT18P5-201ENST00000436075 1291 ntBASIC19.08■□□□□ 0.64
CPNE4Q96A23 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.08■□□□□ 0.64
CPNE4Q96A23 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.08■□□□□ 0.64
CPNE4Q96A23 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.08■□□□□ 0.64
CPNE4Q96A23 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CPNE4Q96A23 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CPNE4Q96A23 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CPNE4Q96A23 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CPNE4Q96A23 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CPNE4Q96A23 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
CPNE4Q96A23 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.07■□□□□ 0.64
CPNE4Q96A23 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 FAM99A-202ENST00000538190 1989 ntBASIC19.07■□□□□ 0.64
CPNE4Q96A23 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.07■□□□□ 0.64
CPNE4Q96A23 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.07■□□□□ 0.64
CPNE4Q96A23 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CPNE4Q96A23 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.07■□□□□ 0.64
CPNE4Q96A23 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.07■□□□□ 0.64
CPNE4Q96A23 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.07■□□□□ 0.64
CPNE4Q96A23 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPNE4Q96A23 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPNE4Q96A23 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CPNE4Q96A23 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPNE4Q96A23 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPNE4Q96A23 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.05■□□□□ 0.64
CPNE4Q96A23 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPNE4Q96A23 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.05■□□□□ 0.64
CPNE4Q96A23 AP004607.4-201ENST00000530158 1459 ntBASIC19.05■□□□□ 0.64
CPNE4Q96A23 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CPNE4Q96A23 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPNE4Q96A23 KRT19P1-201ENST00000405746 1186 ntBASIC19.05■□□□□ 0.64
CPNE4Q96A23 AC104564.3-201ENST00000582367 638 ntBASIC19.05■□□□□ 0.64
CPNE4Q96A23 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CPNE4Q96A23 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPNE4Q96A23 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPNE4Q96A23 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CPNE4Q96A23 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CPNE4Q96A23 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CPNE4Q96A23 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPNE4Q96A23 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.04■□□□□ 0.64
CPNE4Q96A23 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 AC004854.2-201ENST00000608450 1441 ntBASIC19.04■□□□□ 0.64
CPNE4Q96A23 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
CPNE4Q96A23 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CPNE4Q96A23 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPNE4Q96A23 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CPNE4Q96A23 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms