Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
LINC00643Q86TS7 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
LINC00643Q86TS7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
LINC00643Q86TS7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
LINC00643Q86TS7 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC13.33□□□□□ -0.27
LINC00643Q86TS7 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.27
LINC00643Q86TS7 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 NEFHP1-201ENST00000412845 2629 ntBASIC13.33□□□□□ -0.28
LINC00643Q86TS7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
LINC00643Q86TS7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms