Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEMA3DO95025 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEMA3DO95025 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEMA3DO95025 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEMA3DO95025 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.35■□□□□ 0.85
SEMA3DO95025 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.35■□□□□ 0.85
SEMA3DO95025 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.35■□□□□ 0.85
SEMA3DO95025 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEMA3DO95025 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEMA3DO95025 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SEMA3DO95025 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEMA3DO95025 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.34■□□□□ 0.85
SEMA3DO95025 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.34■□□□□ 0.85
SEMA3DO95025 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.34■□□□□ 0.85
SEMA3DO95025 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
SEMA3DO95025 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEMA3DO95025 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.33■□□□□ 0.85
SEMA3DO95025 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SEMA3DO95025 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SEMA3DO95025 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SEMA3DO95025 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SEMA3DO95025 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SEMA3DO95025 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SEMA3DO95025 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.33■□□□□ 0.85
SEMA3DO95025 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.33■□□□□ 0.85
SEMA3DO95025 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.33■□□□□ 0.85
SEMA3DO95025 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SEMA3DO95025 AC005837.3-201ENST00000612163 286 ntBASIC20.33■□□□□ 0.85
SEMA3DO95025 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SEMA3DO95025 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
SEMA3DO95025 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SEMA3DO95025 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SEMA3DO95025 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SEMA3DO95025 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SEMA3DO95025 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SEMA3DO95025 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SEMA3DO95025 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SEMA3DO95025 AC003102.1-202ENST00000563394 1796 ntBASIC20.32■□□□□ 0.84
SEMA3DO95025 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SEMA3DO95025 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SEMA3DO95025 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SEMA3DO95025 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.32■□□□□ 0.84
SEMA3DO95025 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SEMA3DO95025 BX005040.4-201ENST00000637145 1518 ntBASIC20.32■□□□□ 0.84
SEMA3DO95025 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SEMA3DO95025 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.31■□□□□ 0.84
SEMA3DO95025 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SEMA3DO95025 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SEMA3DO95025 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SEMA3DO95025 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.31■□□□□ 0.84
SEMA3DO95025 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.31■□□□□ 0.84
SEMA3DO95025 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.31■□□□□ 0.84
SEMA3DO95025 AC012414.1-201ENST00000556676 535 ntBASIC20.31■□□□□ 0.84
SEMA3DO95025 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.31■□□□□ 0.84
SEMA3DO95025 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.31■□□□□ 0.84
SEMA3DO95025 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.31■□□□□ 0.84
SEMA3DO95025 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 AC007375.3-201ENST00000600936 2314 ntBASIC20.31■□□□□ 0.84
SEMA3DO95025 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEMA3DO95025 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.3■□□□□ 0.84
SEMA3DO95025 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEMA3DO95025 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.3■□□□□ 0.84
SEMA3DO95025 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEMA3DO95025 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.3■□□□□ 0.84
SEMA3DO95025 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.3■□□□□ 0.84
SEMA3DO95025 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEMA3DO95025 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEMA3DO95025 MIR638-201ENST00000385237 100 ntBASIC20.3■□□□□ 0.84
SEMA3DO95025 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SEMA3DO95025 AL354811.1-201ENST00000610286 706 ntBASIC20.3■□□□□ 0.84
SEMA3DO95025 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.3■□□□□ 0.84
SEMA3DO95025 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SEMA3DO95025 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SEMA3DO95025 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.3■□□□□ 0.84
SEMA3DO95025 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.29■□□□□ 0.84
SEMA3DO95025 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SEMA3DO95025 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SEMA3DO95025 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SEMA3DO95025 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.29■□□□□ 0.84
SEMA3DO95025 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.29■□□□□ 0.84
SEMA3DO95025 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.29■□□□□ 0.84
SEMA3DO95025 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SEMA3DO95025 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SEMA3DO95025 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms