Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 LINC01376-201ENST00000418165 553 ntTSL 49.3□□□□□ -0.921e-7■■■■■ 172.3
SF3B1O75533 BACH1-206ENST00000451655 777 ntTSL 39.29□□□□□ -0.921e-7■■■■■ 172.3
SF3B1O75533 MRVI1-AS1-201ENST00000525578 829 ntTSL 3 BASIC9.29□□□□□ -0.921e-7■■■■■ 172.3
SF3B1O75533 SLC9A1-202ENST00000374084 695 ntTSL 59.28□□□□□ -0.921e-7■■■■■ 172.3
SF3B1O75533 AL590705.1-201ENST00000607322 484 ntTSL 4 BASIC9.26□□□□□ -0.931e-7■■■■■ 172.3
SF3B1O75533 CSMD1-212ENST00000523387 3989 ntTSL 29.26□□□□□ -0.931e-7■■■■■ 172.3
SF3B1O75533 CARD8-225ENST00000522773 2884 ntTSL 1 (best)9.26□□□□□ -0.931e-7■■■■■ 172.3
SF3B1O75533 EIF3D-208ENST00000458572 883 ntTSL 39.25□□□□□ -0.931e-7■■■■■ 172.3
SF3B1O75533 UMPS-204ENST00000467167 2242 ntTSL 1 (best)9.23□□□□□ -0.931e-7■■■■■ 172.3
SF3B1O75533 RAD51C-216ENST00000584617 723 ntTSL 59.21□□□□□ -0.941e-7■■■■■ 172.3
SF3B1O75533 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC9.21□□□□□ -0.941e-7■■■■■ 172.3
SF3B1O75533 AREL1-209ENST00000554525 403 ntTSL 39.17□□□□□ -0.942e-6■■■■■ 172.3
SF3B1O75533 PSMD8-206ENST00000592001 853 ntTSL 29.16□□□□□ -0.942e-6■■■■■ 172.3
SF3B1O75533 TAPT1-AS1-201ENST00000570786 2165 ntTSL 5 BASIC9.15□□□□□ -0.941e-7■■■■■ 172.3
SF3B1O75533 CARD8-223ENST00000522068 573 ntTSL 49.13□□□□□ -0.951e-7■■■■■ 172.3
SF3B1O75533 ZFP62-202ENST00000504225 749 ntTSL 29.13□□□□□ -0.951e-7■■■■■ 172.3
SF3B1O75533 SLC25A14-207ENST00000465988 922 ntTSL 29.12□□□□□ -0.951e-7■■■■■ 172.3
SF3B1O75533 PARP14-203ENST00000474669 5229 ntTSL 1 (best)9.11□□□□□ -0.951e-7■■■■■ 172.3
SF3B1O75533 ZNF215-202ENST00000414517 3257 ntAPPRIS P1 TSL 5 BASIC9.11□□□□□ -0.951e-7■■■■■ 172.3
SF3B1O75533 MFN2-205ENST00000490079 445 ntTSL 29.1□□□□□ -0.951e-7■■■■■ 172.3
SF3B1O75533 PAXIP1-205ENST00000464717 3792 ntTSL 59.08□□□□□ -0.961e-7■■■■■ 172.3
SF3B1O75533 BCOR-209ENST00000427012 1969 ntTSL 59.06□□□□□ -0.961e-7■■■■■ 172.3
SF3B1O75533 SFXN5-209ENST00000464825 532 ntTSL 49.05□□□□□ -0.961e-7■■■■■ 172.3
SF3B1O75533 WDR59-221ENST00000569968 393 ntTSL 29.05□□□□□ -0.961e-7■■■■■ 172.3
SF3B1O75533 B3GALNT2-207ENST00000612859 2920 ntTSL 59.05□□□□□ -0.961e-7■■■■■ 172.3
SF3B1O75533 EVL-211ENST00000554460 616 ntTSL 39.04□□□□□ -0.961e-7■■■■■ 172.3
SF3B1O75533 CCNB1IP1-201ENST00000353689 1305 ntAPPRIS P1 TSL 5 BASIC9.03□□□□□ -0.964e-21■■■■■ 172.3
SF3B1O75533 SPINT1-205ENST00000564375 883 ntTSL 29.03□□□□□ -0.961e-7■■■■■ 172.3
SF3B1O75533 WDR59-210ENST00000563797 652 ntTSL 39.02□□□□□ -0.971e-7■■■■■ 172.3
SF3B1O75533 ZNF649-201ENST00000354957 3197 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.971e-7■■■■■ 172.3
SF3B1O75533 ST3GAL5-205ENST00000433665 544 ntTSL 59.01□□□□□ -0.971e-7■■■■■ 172.3
SF3B1O75533 SMTN-209ENST00000432777 567 ntTSL 39.01□□□□□ -0.971e-7■■■■■ 172.3
SF3B1O75533 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC9.01□□□□□ -0.971e-7■■■■■ 172.3
SF3B1O75533 LGALS8-211ENST00000442397 564 ntTSL 48.98□□□□□ -0.971e-7■■■■■ 172.3
SF3B1O75533 SIDT2-219ENST00000620360 3924 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.981e-7■■■■■ 172.3
SF3B1O75533 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.981e-7■■■■■ 172.3
SF3B1O75533 LGALS8-202ENST00000323938 1855 ntTSL 5 BASIC8.93□□□□□ -0.981e-7■■■■■ 172.3
SF3B1O75533 DNAJB14-209ENST00000471738 561 ntTSL 28.9□□□□□ -0.981e-7■■■■■ 172.3
SF3B1O75533 SRGAP2-212ENST00000604925 1013 ntTSL 58.87□□□□□ -0.992e-14■■■■■ 172.3
SF3B1O75533 IL23A-202ENST00000619177 740 ntTSL 28.86□□□□□ -0.991e-7■■■■■ 172.3
SF3B1O75533 CSMD1-213ENST00000523488 3714 ntTSL 1 (best)8.85□□□□□ -0.991e-7■■■■■ 172.3
SF3B1O75533 DLG3-207ENST00000489733 710 ntTSL 58.85□□□□□ -0.991e-7■■■■■ 172.3
SF3B1O75533 TAPT1-AS1-203ENST00000573950 510 ntTSL 3 BASIC8.85□□□□□ -0.991e-7■■■■■ 172.3
SF3B1O75533 AP000317.1-201ENST00000427022 805 ntTSL 3 BASIC8.84□□□□□ -0.991e-7■■■■■ 172.3
SF3B1O75533 MXRA7-207ENST00000592148 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.991e-7■■■■■ 172.3
SF3B1O75533 CARD8-222ENST00000522051 4680 ntTSL 28.81□□□□□ -11e-7■■■■■ 172.3
SF3B1O75533 CA8-203ENST00000528666 510 ntTSL 38.8□□□□□ -11e-7■■■■■ 172.3
SF3B1O75533 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -11e-7■■■■■ 172.3
SF3B1O75533 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC8.78□□□□□ -11e-7■■■■■ 172.3
SF3B1O75533 TMPRSS4-219ENST00000616579 3417 ntAPPRIS ALT2 TSL 5 BASIC8.74□□□□□ -1.011e-7■■■■■ 172.3
SF3B1O75533 DDX60L-206ENST00000505863 2605 ntTSL 28.71□□□□□ -1.021e-7■■■■■ 172.3
SF3B1O75533 CARD8-208ENST00000518622 5233 ntTSL 1 (best)8.71□□□□□ -1.021e-7■■■■■ 172.3
SF3B1O75533 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.021e-7■■■■■ 172.3
SF3B1O75533 SLC25A26-204ENST00000464350 3879 ntTSL 1 (best)8.66□□□□□ -1.021e-7■■■■■ 172.3
SF3B1O75533 HMG20A-208ENST00000559099 558 ntTSL 58.65□□□□□ -1.021e-7■■■■■ 172.3
SF3B1O75533 SPINT1-208ENST00000568200 440 ntTSL 28.64□□□□□ -1.031e-7■■■■■ 172.3
SF3B1O75533 FAM118B-201ENST00000360194 1616 ntAPPRIS ALT1 TSL 5 BASIC8.58□□□□□ -1.041e-7■■■■■ 172.3
SF3B1O75533 TEP1-201ENST00000262715 10695 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.041e-7■■■■■ 172.3
SF3B1O75533 MFSD14C-204ENST00000637076 419 ntTSL 38.54□□□□□ -1.041e-7■■■■■ 172.3
SF3B1O75533 EVL-216ENST00000555706 583 ntTSL 48.52□□□□□ -1.051e-7■■■■■ 172.3
SF3B1O75533 EVL-205ENST00000553771 560 ntTSL 48.52□□□□□ -1.051e-7■■■■■ 172.3
SF3B1O75533 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC8.41□□□□□ -1.061e-7■■■■■ 172.3
SF3B1O75533 PDHX-208ENST00000533550 584 ntTSL 48.38□□□□□ -1.071e-7■■■■■ 172.3
SF3B1O75533 HMG20A-207ENST00000559035 563 ntTSL 48.37□□□□□ -1.071e-7■■■■■ 172.3
SF3B1O75533 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.071e-7■■■■■ 172.3
SF3B1O75533 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC8.34□□□□□ -1.072e-6■■■■■ 172.3
SF3B1O75533 CCNB1IP1-214ENST00000556854 1294 ntTSL 58.32□□□□□ -1.084e-21■■■■■ 172.3
SF3B1O75533 SIPA1L1-203ENST00000537413 4129 ntTSL 2 BASIC8.3□□□□□ -1.081e-7■■■■■ 172.3
SF3B1O75533 ATP9B-212ENST00000587919 509 ntTSL 38.25□□□□□ -1.091e-7■■■■■ 172.3
SF3B1O75533 VTI1A-202ENST00000432306 1738 ntTSL 1 (best) BASIC8.24□□□□□ -1.091e-7■■■■■ 172.3
SF3B1O75533 LGALS8-215ENST00000481485 799 ntTSL 58.24□□□□□ -1.091e-7■■■■■ 172.3
SF3B1O75533 HARS2-210ENST00000513688 694 ntTSL 38.24□□□□□ -1.091e-7■■■■■ 172.3
SF3B1O75533 METTL14-206ENST00000628452 6625 ntTSL 58.24□□□□□ -1.091e-7■■■■■ 172.3
SF3B1O75533 ZEB1-203ENST00000424869 887 ntTSL 58.23□□□□□ -1.091e-6■■■■■ 172.3
SF3B1O75533 VRK2-203ENST00000417641 2381 ntAPPRIS ALT2 TSL 2 BASIC8.19□□□□□ -1.12e-6■■■■■ 172.3
SF3B1O75533 AGBL4-203ENST00000371838 1353 ntAPPRIS ALT2 TSL 5 BASIC8.18□□□□□ -1.11e-7■■■■■ 172.3
SF3B1O75533 UTP4-210ENST00000567287 366 ntTSL 38.18□□□□□ -1.11e-7■■■■■ 172.3
SF3B1O75533 CWC15-206ENST00000621358 1113 ntTSL 58.16□□□□□ -1.11e-7■■■■■ 172.3
SF3B1O75533 CWC15-201ENST00000279839 1576 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.111e-7■■■■■ 172.3
SF3B1O75533 TMPPE-202ENST00000416695 3451 ntAPPRIS ALT2 TSL 2 BASIC8.13□□□□□ -1.111e-7■■■■■ 172.3
SF3B1O75533 ZEB1-223ENST00000561304 1383 ntTSL 1 (best)8.12□□□□□ -1.111e-6■■■■■ 172.3
SF3B1O75533 TRAPPC9-207ENST00000520532 560 ntTSL 58.11□□□□□ -1.111e-7■■■■■ 172.3
SF3B1O75533 ACAD10-202ENST00000413681 2951 ntTSL 28.09□□□□□ -1.111e-7■■■■■ 172.3
SF3B1O75533 AVL9-203ENST00000446718 6372 ntTSL 58.07□□□□□ -1.121e-7■■■■■ 172.3
SF3B1O75533 CARD8-214ENST00000520007 614 ntTSL 2 BASIC8.05□□□□□ -1.121e-7■■■■■ 172.3
SF3B1O75533 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.131e-7■■■■■ 172.3
SF3B1O75533 UEVLD-205ENST00000396197 4156 ntAPPRIS P1 TSL 5 BASIC8□□□□□ -1.131e-7■■■■■ 172.3
SF3B1O75533 KIAA0319L-212ENST00000473844 513 ntTSL 38□□□□□ -1.131e-7■■■■■ 172.3
SF3B1O75533 ARID1B-229ENST00000637741 3915 ntTSL 57.99□□□□□ -1.131e-7■■■■■ 172.3
SF3B1O75533 MYLK3-205ENST00000565182 580 ntTSL 47.96□□□□□ -1.141e-7■■■■■ 172.3
SF3B1O75533 ELF2-210ENST00000512627 611 ntTSL 27.94□□□□□ -1.141e-7■■■■■ 172.3
SF3B1O75533 ANKFY1-207ENST00000573250 588 ntTSL 57.91□□□□□ -1.141e-7■■■■■ 172.3
SF3B1O75533 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC7.89□□□□□ -1.151e-7■■■■■ 172.3
SF3B1O75533 PLAGL1-212ENST00000626022 559 ntTSL 47.88□□□□□ -1.151e-7■■■■■ 172.3
SF3B1O75533 LGALS8-210ENST00000434231 574 ntTSL 47.86□□□□□ -1.151e-7■■■■■ 172.3
SF3B1O75533 MIER3-201ENST00000336942 601 ntTSL 57.86□□□□□ -1.151e-7■■■■■ 172.3
SF3B1O75533 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC7.86□□□□□ -1.151e-7■■■■■ 172.3
SF3B1O75533 KIF13A-206ENST00000502297 4009 ntTSL 57.86□□□□□ -1.151e-7■■■■■ 172.3
SF3B1O75533 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.151e-7■■■■■ 172.3
SF3B1O75533 LTBP1-209ENST00000432635 593 ntTSL 57.78□□□□□ -1.161e-7■■■■■ 172.3
Retrieved 100 of 46,956 protein–RNA pairs in 1912.8 ms