RNA–Protein interactions for RNA: ENST00000523387.5

CSMD1-212, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 2

Gene CSMD1, Length 3,989 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-212ENST00000523387 NISCHQ9Y2I1 1504 aa16.38■□□□□ 0.21
CSMD1-212ENST00000523387 SUPT5HO00267 1087 aaKnown RBP15.17■□□□□ 0.02
CSMD1-212ENST00000523387 SHROOM4Q9ULL8 1493 aa15.1■□□□□ 0.01
CSMD1-212ENST00000523387 PCGF6Q9BYE7 350 aa14.85□□□□□ -0.03
CSMD1-212ENST00000523387 HRCP23327 699 aa14.83□□□□□ -0.04
CSMD1-212ENST00000523387 DCAF8L2P0C7V8 631 aa14.75□□□□□ -0.05
CSMD1-212ENST00000523387 PPARGC1BQ86YN6 1023 aaKnown RBP14.59□□□□□ -0.07
CSMD1-212ENST00000523387 CHIC1Q5VXU3 224 aa14.47□□□□□ -0.09
CSMD1-212ENST00000523387 PELP1Q8IZL8 1130 aaKnown RBP14.45□□□□□ -0.1
CSMD1-212ENST00000523387 LOC105371045A0A1W2PR82 267 aa14.28□□□□□ -0.12
CSMD1-212ENST00000523387 TRIM26Q12899 539 aaPredicted RBP14.26□□□□□ -0.13
CSMD1-212ENST00000523387 ZEB1P37275 1124 aaPredicted RBP14.26□□□□□ -0.13
CSMD1-212ENST00000523387 EHMT2Q96KQ7 1210 aa14.23□□□□□ -0.13
CSMD1-212ENST00000523387 MYO15BQ96JP2 1530 aa14.17□□□□□ -0.14
CSMD1-212ENST00000523387 FAM9AQ8IZU1 332 aaPredicted RBP14.13□□□□□ -0.15
CSMD1-212ENST00000523387 DCAF1Q9Y4B6 1507 aa13.99□□□□□ -0.17
CSMD1-212ENST00000523387 CENPBP07199 599 aaPredicted RBP13.98□□□□□ -0.17
CSMD1-212ENST00000523387 TRIM41Q8WV44 630 aa13.98□□□□□ -0.17
CSMD1-212ENST00000523387 MYT1Q01538 1121 aa13.95□□□□□ -0.18
CSMD1-212ENST00000523387 CCER1Q8TC90 406 aaPredicted RBP13.94□□□□□ -0.18
CSMD1-212ENST00000523387 SCAF1Q9H7N4 1312 aaKnown RBP13.92□□□□□ -0.18
CSMD1-212ENST00000523387 TTBK1Q5TCY1 1321 aaPredicted RBP13.85□□□□□ -0.19
CSMD1-212ENST00000523387 ZCCHC6Q5VYS8 1495 aaKnown RBP13.83□□□□□ -0.2
CSMD1-212ENST00000523387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.77□□□□□ -0.21
CSMD1-212ENST00000523387 GTF3C3Q9Y5Q9 886 aa13.76□□□□□ -0.21
CSMD1-212ENST00000523387 ACIN1Q9UKV3 1341 aaKnown RBP13.76□□□□□ -0.21
CSMD1-212ENST00000523387 YTHDC1Q96MU7 727 aaKnown RBP13.76□□□□□ -0.21
CSMD1-212ENST00000523387 DIEXFQ68CQ4 756 aaKnown RBP13.72□□□□□ -0.21
CSMD1-212ENST00000523387 CCDC180Q9P1Z9 1646 aa13.69□□□□□ -0.22
CSMD1-212ENST00000523387 NEUROD1Q13562 356 aa13.68□□□□□ -0.22
CSMD1-212ENST00000523387 UBTFP17480 764 aaKnown RBP13.44□□□□□ -0.26
CSMD1-212ENST00000523387 APLP2Q06481 763 aa13.43□□□□□ -0.26
CSMD1-212ENST00000523387 ZNF316A6NFI3 1004 aaPredicted RBP13.42□□□□□ -0.26
CSMD1-212ENST00000523387 HNRNPUL2Q1KMD3 747 aaKnown RBP13.37□□□□□ -0.27
CSMD1-212ENST00000523387 RANGAP1P46060 587 aaPredicted RBP13.31□□□□□ -0.28
CSMD1-212ENST00000523387 RSF1Q96T23 1441 aaPredicted RBP13.26□□□□□ -0.29
CSMD1-212ENST00000523387 MIER1Q8N108 512 aa13.24□□□□□ -0.29
CSMD1-212ENST00000523387 SCRIBQ14160 1630 aa13.15□□□□□ -0.3
CSMD1-212ENST00000523387 NEFLP07196 543 aa13.13□□□□□ -0.31
CSMD1-212ENST00000523387 BCANQ96GW7 911 aa13.1□□□□□ -0.31
CSMD1-212ENST00000523387 RB1CC1Q8TDY2 1594 aa13.09□□□□□ -0.31
CSMD1-212ENST00000523387 ERICH6Q7L0X2 663 aa13.09□□□□□ -0.31
CSMD1-212ENST00000523387 ABCC9O60706 1549 aa13.09□□□□□ -0.31
CSMD1-212ENST00000523387 CSRNP3Q8WYN3 585 aa13.06□□□□□ -0.32
CSMD1-212ENST00000523387 CLSPNQ9HAW4 1339 aa13.04□□□□□ -0.32
CSMD1-212ENST00000523387 CEP162Q5TB80 1403 aa13.03□□□□□ -0.32
CSMD1-212ENST00000523387 ITGAEP38570 1179 aa13.02□□□□□ -0.33
CSMD1-212ENST00000523387 SUPT16HQ9Y5B9 1047 aaKnown RBP12.97□□□□□ -0.33
CSMD1-212ENST00000523387 ANP32EQ9BTT0 268 aa12.96□□□□□ -0.33
CSMD1-212ENST00000523387 TNIKQ9UKE5 1360 aa12.91□□□□□ -0.34
CSMD1-212ENST00000523387 FKBP8Q14318 412 aa12.91□□□□□ -0.34
CSMD1-212ENST00000523387 CECR2Q9BXF3 1484 aa12.9□□□□□ -0.34
CSMD1-212ENST00000523387 BCL11AQ9H165 835 aa12.86□□□□□ -0.35
CSMD1-212ENST00000523387 TSHZ2Q9NRE2 1034 aa12.85□□□□□ -0.35
CSMD1-212ENST00000523387 WRNQ14191 1432 aaPredicted RBP eCLIP12.84□□□□□ -0.35
CSMD1-212ENST00000523387 SOGA1O94964 1423 aa12.83□□□□□ -0.36
CSMD1-212ENST00000523387 ATP1B4Q9UN42 357 aaPredicted RBP12.82□□□□□ -0.36
CSMD1-212ENST00000523387 MROH2BQ7Z745 1585 aa12.82□□□□□ -0.36
CSMD1-212ENST00000523387 CLIP1P30622 1438 aa12.81□□□□□ -0.36
CSMD1-212ENST00000523387 GOLGA3Q08378 1498 aa12.8□□□□□ -0.36
CSMD1-212ENST00000523387 CCDC88BA6NC98 1476 aa12.79□□□□□ -0.36
CSMD1-212ENST00000523387 EEA1Q15075 1411 aa12.79□□□□□ -0.36
CSMD1-212ENST00000523387 DDX10Q13206 875 aaKnown RBP12.78□□□□□ -0.36
CSMD1-212ENST00000523387 ABCC8Q09428 1581 aa12.77□□□□□ -0.37
CSMD1-212ENST00000523387 ANP32CO43423 234 aa12.76□□□□□ -0.37
CSMD1-212ENST00000523387 TRIM52Q96A61 297 aa12.74□□□□□ -0.37
CSMD1-212ENST00000523387 CDK11AQ9UQ88 783 aaPredicted RBP12.74□□□□□ -0.37
CSMD1-212ENST00000523387 WIZO95785 1651 aa12.71□□□□□ -0.37
CSMD1-212ENST00000523387 FAM50AQ14320 339 aaKnown RBP12.7□□□□□ -0.38
CSMD1-212ENST00000523387 RBM19Q9Y4C8 960 aaKnown RBP12.66□□□□□ -0.38
CSMD1-212ENST00000523387 CEP164Q9UPV0 1460 aa12.66□□□□□ -0.38
CSMD1-212ENST00000523387 HIRIP3Q9BW71 556 aaPredicted RBP12.65□□□□□ -0.38
CSMD1-212ENST00000523387 RUSC2Q8N2Y8 1516 aa12.64□□□□□ -0.39
CSMD1-212ENST00000523387 KCNH8Q96L42 1107 aa12.64□□□□□ -0.39
CSMD1-212ENST00000523387 PABPN1Q86U42 306 aaKnown RBP eCLIP12.64□□□□□ -0.39
CSMD1-212ENST00000523387 VPS8Q8N3P4 1428 aa12.64□□□□□ -0.39
CSMD1-212ENST00000523387 BAZ1AQ9NRL2 1556 aaPredicted RBP12.62□□□□□ -0.39
CSMD1-212ENST00000523387 IRX6P78412 446 aaPredicted RBP12.62□□□□□ -0.39
CSMD1-212ENST00000523387 HNRNPUQ00839 825 aaKnown RBP eCLIP12.6□□□□□ -0.39
CSMD1-212ENST00000523387 DHX57Q6P158 1386 aaKnown RBP12.59□□□□□ -0.39
CSMD1-212ENST00000523387 RTL5Q5HYW3 569 aaPredicted RBP12.57□□□□□ -0.4
CSMD1-212ENST00000523387 NACADO15069 1562 aa12.56□□□□□ -0.4
CSMD1-212ENST00000523387 CNGB1Q14028 1251 aaPredicted RBP12.55□□□□□ -0.4
CSMD1-212ENST00000523387 KANK4Q5T7N3 995 aaPredicted RBP12.54□□□□□ -0.4
CSMD1-212ENST00000523387 SIN3AQ96ST3 1273 aa12.53□□□□□ -0.4
CSMD1-212ENST00000523387 NBR1Q14596 966 aa12.5□□□□□ -0.41
CSMD1-212ENST00000523387 MYT1LQ9UL68 1186 aa12.5□□□□□ -0.41
CSMD1-212ENST00000523387 TOP2AP11388 1531 aaKnown RBP12.5□□□□□ -0.41
CSMD1-212ENST00000523387 CCNB3Q8WWL7 1395 aa12.49□□□□□ -0.41
CSMD1-212ENST00000523387 TONSLQ96HA7 1378 aa12.49□□□□□ -0.41
CSMD1-212ENST00000523387 POLR3GLQ9BT43 218 aa12.48□□□□□ -0.41
CSMD1-212ENST00000523387 P3H3Q8IVL6 736 aa12.47□□□□□ -0.41
CSMD1-212ENST00000523387 RAPGEF2Q9Y4G8 1499 aa12.45□□□□□ -0.42
CSMD1-212ENST00000523387 CCER2I3L3R5 266 aa12.45□□□□□ -0.42
CSMD1-212ENST00000523387 FAM9BQ8IZU0 186 aa12.44□□□□□ -0.42
CSMD1-212ENST00000523387 ANP32AP39687 249 aaKnown RBP12.43□□□□□ -0.42
CSMD1-212ENST00000523387 RAB3GAP2Q9H2M9 1393 aa12.42□□□□□ -0.42
CSMD1-212ENST00000523387 DEKP35659 375 aaKnown RBP12.4□□□□□ -0.42
CSMD1-212ENST00000523387 SMARCA2P51531 1590 aa12.4□□□□□ -0.42
CSMD1-212ENST00000523387 PPP4R2Q9NY27 417 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms