RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 DCAF8L2P0C7V8 631 aa14.65□□□□□ -0.06
CSMD1-216ENST00000602557 PELP1Q8IZL8 1130 aaKnown RBP14.14□□□□□ -0.15
CSMD1-216ENST00000602557 SUPT5HO00267 1087 aaKnown RBP14□□□□□ -0.17
CSMD1-216ENST00000602557 MYT1Q01538 1121 aa13.97□□□□□ -0.17
CSMD1-216ENST00000602557 EHMT2Q96KQ7 1210 aa13.8□□□□□ -0.2
CSMD1-216ENST00000602557 SHROOM4Q9ULL8 1493 aa13.77□□□□□ -0.2
CSMD1-216ENST00000602557 ERICH6Q7L0X2 663 aa13.76□□□□□ -0.21
CSMD1-216ENST00000602557 NISCHQ9Y2I1 1504 aa13.6□□□□□ -0.23
CSMD1-216ENST00000602557 PCGF6Q9BYE7 350 aa13.59□□□□□ -0.23
CSMD1-216ENST00000602557 CENPBP07199 599 aaPredicted RBP13.58□□□□□ -0.24
CSMD1-216ENST00000602557 YTHDC1Q96MU7 727 aaKnown RBP13.42□□□□□ -0.26
CSMD1-216ENST00000602557 APLP2Q06481 763 aa13.42□□□□□ -0.26
CSMD1-216ENST00000602557 CCER1Q8TC90 406 aaPredicted RBP13.41□□□□□ -0.26
CSMD1-216ENST00000602557 TTBK1Q5TCY1 1321 aaPredicted RBP13.39□□□□□ -0.27
CSMD1-216ENST00000602557 FAM9AQ8IZU1 332 aaPredicted RBP13.27□□□□□ -0.29
CSMD1-216ENST00000602557 NEFLP07196 543 aa13.18□□□□□ -0.3
CSMD1-216ENST00000602557 ZEB1P37275 1124 aaPredicted RBP13.17□□□□□ -0.3
CSMD1-216ENST00000602557 RANGAP1P46060 587 aaPredicted RBP13.12□□□□□ -0.31
CSMD1-216ENST00000602557 HRCP23327 699 aa13.01□□□□□ -0.33
CSMD1-216ENST00000602557 PPARGC1BQ86YN6 1023 aaKnown RBP12.96□□□□□ -0.33
CSMD1-216ENST00000602557 ATP1B4Q9UN42 357 aaPredicted RBP12.94□□□□□ -0.34
CSMD1-216ENST00000602557 TRIM41Q8WV44 630 aa12.89□□□□□ -0.35
CSMD1-216ENST00000602557 DAXXQ9UER7 740 aaPredicted RBP12.86□□□□□ -0.35
CSMD1-216ENST00000602557 UBTFP17480 764 aaKnown RBP12.84□□□□□ -0.35
CSMD1-216ENST00000602557 RTL5Q5HYW3 569 aaPredicted RBP12.83□□□□□ -0.36
CSMD1-216ENST00000602557 GTF3C3Q9Y5Q9 886 aa12.73□□□□□ -0.37
CSMD1-216ENST00000602557 BCANQ96GW7 911 aa12.68□□□□□ -0.38
CSMD1-216ENST00000602557 EIF5BO60841 1220 aaKnown RBP12.63□□□□□ -0.39
CSMD1-216ENST00000602557 TRIM26Q12899 539 aaPredicted RBP12.63□□□□□ -0.39
CSMD1-216ENST00000602557 ZNF316A6NFI3 1004 aaPredicted RBP12.62□□□□□ -0.39
CSMD1-216ENST00000602557 POLR3GLQ9BT43 218 aa12.58□□□□□ -0.4
CSMD1-216ENST00000602557 DIEXFQ68CQ4 756 aaKnown RBP12.56□□□□□ -0.4
CSMD1-216ENST00000602557 ITGAEP38570 1179 aa12.54□□□□□ -0.4
CSMD1-216ENST00000602557 CNGB1Q14028 1251 aaPredicted RBP12.5□□□□□ -0.41
CSMD1-216ENST00000602557 ACIN1Q9UKV3 1341 aaKnown RBP12.43□□□□□ -0.42
CSMD1-216ENST00000602557 MYT1LQ9UL68 1186 aa12.43□□□□□ -0.42
CSMD1-216ENST00000602557 HNRNPUL2Q1KMD3 747 aaKnown RBP12.41□□□□□ -0.42
CSMD1-216ENST00000602557 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.41□□□□□ -0.42
CSMD1-216ENST00000602557 CLSPNQ9HAW4 1339 aa12.37□□□□□ -0.43
CSMD1-216ENST00000602557 CHIC1Q5VXU3 224 aa12.37□□□□□ -0.43
CSMD1-216ENST00000602557 LOC105371045A0A1W2PR82 267 aa12.37□□□□□ -0.43
CSMD1-216ENST00000602557 CDK11AQ9UQ88 783 aaPredicted RBP12.36□□□□□ -0.43
CSMD1-216ENST00000602557 GLIPR1L2Q4G1C9 344 aa12.35□□□□□ -0.43
CSMD1-216ENST00000602557 SLC4A1APQ9BWU0 796 aaKnown RBP12.33□□□□□ -0.44
CSMD1-216ENST00000602557 SCAF1Q9H7N4 1312 aaKnown RBP12.31□□□□□ -0.44
CSMD1-216ENST00000602557 NBR1Q14596 966 aa12.27□□□□□ -0.45
CSMD1-216ENST00000602557 NPM2Q86SE8 214 aaKnown RBP12.24□□□□□ -0.45
CSMD1-216ENST00000602557 BCL11AQ9H165 835 aa12.21□□□□□ -0.45
CSMD1-216ENST00000602557 ANP32AP39687 249 aaKnown RBP12.21□□□□□ -0.46
CSMD1-216ENST00000602557 FAM50AQ14320 339 aaKnown RBP12.16□□□□□ -0.46
CSMD1-216ENST00000602557 NEUROD1Q13562 356 aa12.13□□□□□ -0.47
CSMD1-216ENST00000602557 ARXQ96QS3 562 aa12.11□□□□□ -0.47
CSMD1-216ENST00000602557 ZNF326Q5BKZ1 582 aaKnown RBP12.08□□□□□ -0.48
CSMD1-216ENST00000602557 TRIM52Q96A61 297 aa12.07□□□□□ -0.48
CSMD1-216ENST00000602557 RTN4Q9NQC3 1192 aaKnown RBP12.07□□□□□ -0.48
CSMD1-216ENST00000602557 FKBP8Q14318 412 aa12.07□□□□□ -0.48
CSMD1-216ENST00000602557 ANP32EQ9BTT0 268 aa12.05□□□□□ -0.48
CSMD1-216ENST00000602557 ANP32CO43423 234 aa12.02□□□□□ -0.49
CSMD1-216ENST00000602557 ZBTB47Q9UFB7 747 aaPredicted RBP11.99□□□□□ -0.49
CSMD1-216ENST00000602557 CANXP27824 592 aaKnown RBP11.99□□□□□ -0.49
CSMD1-216ENST00000602557 ANP32BQ92688 251 aaKnown RBP11.96□□□□□ -0.49
CSMD1-216ENST00000602557 SLC24A1O60721 1099 aa11.93□□□□□ -0.5
CSMD1-216ENST00000602557 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.88□□□□□ -0.51
CSMD1-216ENST00000602557 AMER1Q5JTC6 1135 aaPredicted RBP11.87□□□□□ -0.51
CSMD1-216ENST00000602557 IRX6P78412 446 aaPredicted RBP11.86□□□□□ -0.51
CSMD1-216ENST00000602557 NAP1L5Q96NT1 182 aaPredicted RBP11.85□□□□□ -0.51
CSMD1-216ENST00000602557 HSP90AA1P07900 732 aaKnown RBP11.82□□□□□ -0.52
CSMD1-216ENST00000602557 ARID3CA6NKF2 412 aa11.81□□□□□ -0.52
CSMD1-216ENST00000602557 TNNT2P45379 298 aaPredicted RBP11.81□□□□□ -0.52
CSMD1-216ENST00000602557 PABPN1Q86U42 306 aaKnown RBP eCLIP11.81□□□□□ -0.52
CSMD1-216ENST00000602557 FBLN2P98095 1184 aa11.79□□□□□ -0.52
CSMD1-216ENST00000602557 ABCC9O60706 1549 aa11.79□□□□□ -0.52
CSMD1-216ENST00000602557 NEFMP07197 916 aa11.79□□□□□ -0.52
CSMD1-216ENST00000602557 DEKP35659 375 aaKnown RBP11.76□□□□□ -0.53
CSMD1-216ENST00000602557 LAS1LQ9Y4W2 734 aaKnown RBP11.74□□□□□ -0.53
CSMD1-216ENST00000602557 P3H3Q8IVL6 736 aa11.74□□□□□ -0.53
CSMD1-216ENST00000602557 CCDC136Q96JN2 1154 aa11.73□□□□□ -0.53
CSMD1-216ENST00000602557 HNRNPUQ00839 825 aaKnown RBP eCLIP11.73□□□□□ -0.53
CSMD1-216ENST00000602557 MIER1Q8N108 512 aa11.72□□□□□ -0.53
CSMD1-216ENST00000602557 CDK11BP21127 795 aaKnown RBP11.72□□□□□ -0.53
CSMD1-216ENST00000602557 CSRNP3Q8WYN3 585 aa11.72□□□□□ -0.53
CSMD1-216ENST00000602557 ARID4BQ4LE39 1312 aaPredicted RBP11.72□□□□□ -0.53
CSMD1-216ENST00000602557 ZNF777Q9ULD5 760 aaPredicted RBP11.69□□□□□ -0.54
CSMD1-216ENST00000602557 UPF2Q9HAU5 1272 aaKnown RBP11.67□□□□□ -0.54
CSMD1-216ENST00000602557 ERICH6BQ5W0A0 696 aa11.67□□□□□ -0.54
CSMD1-216ENST00000602557 TRIM44Q96DX7 344 aaPredicted RBP11.66□□□□□ -0.54
CSMD1-216ENST00000602557 TONSLQ96HA7 1378 aa11.66□□□□□ -0.54
CSMD1-216ENST00000602557 SCRIBQ14160 1630 aa11.65□□□□□ -0.55
CSMD1-216ENST00000602557 FAM9BQ8IZU0 186 aa11.65□□□□□ -0.55
CSMD1-216ENST00000602557 ARID3AQ99856 593 aa11.63□□□□□ -0.55
CSMD1-216ENST00000602557 DDX10Q13206 875 aaKnown RBP11.62□□□□□ -0.55
CSMD1-216ENST00000602557 NOP58Q9Y2X3 529 aaKnown RBP11.62□□□□□ -0.55
CSMD1-216ENST00000602557 SALL2Q9Y467 1007 aaPredicted RBP11.6□□□□□ -0.55
CSMD1-216ENST00000602557 DDRGK1Q96HY6 314 aa11.58□□□□□ -0.56
CSMD1-216ENST00000602557 PTMAP06454 111 aaKnown RBP11.58□□□□□ -0.56
CSMD1-216ENST00000602557 DNTTIP2Q5QJE6 756 aaKnown RBP11.56□□□□□ -0.56
CSMD1-216ENST00000602557 SUPT16HQ9Y5B9 1047 aaKnown RBP11.56□□□□□ -0.56
CSMD1-216ENST00000602557 PLPPR3Q6T4P5 718 aa11.55□□□□□ -0.56
CSMD1-216ENST00000602557 CHGAP10645 457 aaKnown RBP11.54□□□□□ -0.56
CSMD1-216ENST00000602557 DCAF1Q9Y4B6 1507 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms