RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 NISCHQ9Y2I1 1504 aa16.47■□□□□ 0.23
CSMD1-213ENST00000523488 HRCP23327 699 aa14.45□□□□□ -0.1
CSMD1-213ENST00000523488 MYO15BQ96JP2 1530 aa14.35□□□□□ -0.11
CSMD1-213ENST00000523488 DCAF1Q9Y4B6 1507 aa14.32□□□□□ -0.12
CSMD1-213ENST00000523488 CCDC180Q9P1Z9 1646 aa14.31□□□□□ -0.12
CSMD1-213ENST00000523488 PELP1Q8IZL8 1130 aaKnown RBP14.3□□□□□ -0.12
CSMD1-213ENST00000523488 ZCCHC6Q5VYS8 1495 aaKnown RBP14.21□□□□□ -0.13
CSMD1-213ENST00000523488 MYT1Q01538 1121 aa13.88□□□□□ -0.19
CSMD1-213ENST00000523488 CHIC1Q5VXU3 224 aa13.78□□□□□ -0.2
CSMD1-213ENST00000523488 ABCC9O60706 1549 aa13.62□□□□□ -0.23
CSMD1-213ENST00000523488 SCAF1Q9H7N4 1312 aaKnown RBP13.6□□□□□ -0.23
CSMD1-213ENST00000523488 PPARGC1BQ86YN6 1023 aaKnown RBP13.6□□□□□ -0.23
CSMD1-213ENST00000523488 PCGF6Q9BYE7 350 aa13.6□□□□□ -0.23
CSMD1-213ENST00000523488 ZEB1P37275 1124 aaPredicted RBP13.57□□□□□ -0.24
CSMD1-213ENST00000523488 TRIM26Q12899 539 aaPredicted RBP13.51□□□□□ -0.25
CSMD1-213ENST00000523488 EIF4G1Q04637 1599 aaKnown RBP13.44□□□□□ -0.26
CSMD1-213ENST00000523488 DCAF8L2P0C7V8 631 aa13.43□□□□□ -0.26
CSMD1-213ENST00000523488 SUPT5HO00267 1087 aaKnown RBP13.35□□□□□ -0.27
CSMD1-213ENST00000523488 TTBK1Q5TCY1 1321 aaPredicted RBP13.32□□□□□ -0.28
CSMD1-213ENST00000523488 RB1CC1Q8TDY2 1594 aa13.31□□□□□ -0.28
CSMD1-213ENST00000523488 SHROOM4Q9ULL8 1493 aa13.3□□□□□ -0.28
CSMD1-213ENST00000523488 ACIN1Q9UKV3 1341 aaKnown RBP13.26□□□□□ -0.29
CSMD1-213ENST00000523488 WRNQ14191 1432 aaPredicted RBP eCLIP13.22□□□□□ -0.29
CSMD1-213ENST00000523488 RSF1Q96T23 1441 aaPredicted RBP13.07□□□□□ -0.32
CSMD1-213ENST00000523488 NEUROD1Q13562 356 aa13.06□□□□□ -0.32
CSMD1-213ENST00000523488 TRIM41Q8WV44 630 aa13.04□□□□□ -0.32
CSMD1-213ENST00000523488 LOC105371045A0A1W2PR82 267 aa12.99□□□□□ -0.33
CSMD1-213ENST00000523488 BAZ1AQ9NRL2 1556 aaPredicted RBP12.98□□□□□ -0.33
CSMD1-213ENST00000523488 CLSPNQ9HAW4 1339 aa12.97□□□□□ -0.33
CSMD1-213ENST00000523488 NACADO15069 1562 aa12.95□□□□□ -0.34
CSMD1-213ENST00000523488 CENPBP07199 599 aaPredicted RBP12.93□□□□□ -0.34
CSMD1-213ENST00000523488 GTF3C3Q9Y5Q9 886 aa12.9□□□□□ -0.34
CSMD1-213ENST00000523488 KIF21BO75037 1637 aa12.77□□□□□ -0.37
CSMD1-213ENST00000523488 DIEXFQ68CQ4 756 aaKnown RBP12.74□□□□□ -0.37
CSMD1-213ENST00000523488 CUX2O14529 1486 aa12.73□□□□□ -0.37
CSMD1-213ENST00000523488 EEA1Q15075 1411 aa12.72□□□□□ -0.37
CSMD1-213ENST00000523488 WIZO95785 1651 aa12.7□□□□□ -0.38
CSMD1-213ENST00000523488 TOP2AP11388 1531 aaKnown RBP12.69□□□□□ -0.38
CSMD1-213ENST00000523488 TNIKQ9UKE5 1360 aa12.68□□□□□ -0.38
CSMD1-213ENST00000523488 MROH2BQ7Z745 1585 aa12.68□□□□□ -0.38
CSMD1-213ENST00000523488 SCRIBQ14160 1630 aa12.64□□□□□ -0.39
CSMD1-213ENST00000523488 ZNF316A6NFI3 1004 aaPredicted RBP12.63□□□□□ -0.39
CSMD1-213ENST00000523488 SMARCA2P51531 1590 aa12.62□□□□□ -0.39
CSMD1-213ENST00000523488 PEG3Q9GZU2 1588 aa12.6□□□□□ -0.39
CSMD1-213ENST00000523488 CEP162Q5TB80 1403 aa12.59□□□□□ -0.39
CSMD1-213ENST00000523488 ANP32EQ9BTT0 268 aa12.59□□□□□ -0.39
CSMD1-213ENST00000523488 BAZ1BQ9UIG0 1483 aaKnown RBP12.58□□□□□ -0.4
CSMD1-213ENST00000523488 YTHDC1Q96MU7 727 aaKnown RBP12.58□□□□□ -0.4
CSMD1-213ENST00000523488 CCER1Q8TC90 406 aaPredicted RBP12.57□□□□□ -0.4
CSMD1-213ENST00000523488 BCL11AQ9H165 835 aa12.55□□□□□ -0.4
CSMD1-213ENST00000523488 SMARCA4P51532 1647 aa12.5□□□□□ -0.41
CSMD1-213ENST00000523488 SYNJ1O43426 1573 aa12.49□□□□□ -0.41
CSMD1-213ENST00000523488 TSHZ2Q9NRE2 1034 aa12.49□□□□□ -0.41
CSMD1-213ENST00000523488 ABCC8Q09428 1581 aa12.49□□□□□ -0.41
CSMD1-213ENST00000523488 CECR2Q9BXF3 1484 aa12.48□□□□□ -0.41
CSMD1-213ENST00000523488 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.48□□□□□ -0.41
CSMD1-213ENST00000523488 EHMT2Q96KQ7 1210 aa12.47□□□□□ -0.41
CSMD1-213ENST00000523488 GOLGA3Q08378 1498 aa12.47□□□□□ -0.41
CSMD1-213ENST00000523488 FAM9AQ8IZU1 332 aaPredicted RBP12.47□□□□□ -0.41
CSMD1-213ENST00000523488 SUPT16HQ9Y5B9 1047 aaKnown RBP12.47□□□□□ -0.41
CSMD1-213ENST00000523488 CCDC88BA6NC98 1476 aa12.46□□□□□ -0.41
CSMD1-213ENST00000523488 UNC13AQ9UPW8 1703 aa12.44□□□□□ -0.42
CSMD1-213ENST00000523488 BIVM-ERCC5R4GMW8 1640 aa12.43□□□□□ -0.42
CSMD1-213ENST00000523488 ERICH3Q5RHP9 1530 aa12.42□□□□□ -0.42
CSMD1-213ENST00000523488 MIER1Q8N108 512 aa12.41□□□□□ -0.42
CSMD1-213ENST00000523488 RRBP1Q9P2E9 1410 aaKnown RBP12.39□□□□□ -0.43
CSMD1-213ENST00000523488 VPS8Q8N3P4 1428 aa12.39□□□□□ -0.43
CSMD1-213ENST00000523488 MAP3K1Q13233 1512 aa12.38□□□□□ -0.43
CSMD1-213ENST00000523488 CEP164Q9UPV0 1460 aa12.37□□□□□ -0.43
CSMD1-213ENST00000523488 DHX57Q6P158 1386 aaKnown RBP12.34□□□□□ -0.43
CSMD1-213ENST00000523488 MAPKBP1O60336 1514 aa12.34□□□□□ -0.43
CSMD1-213ENST00000523488 CLIP1P30622 1438 aa12.31□□□□□ -0.44
CSMD1-213ENST00000523488 SOGA1O94964 1423 aa12.29□□□□□ -0.44
CSMD1-213ENST00000523488 POLR1AO95602 1720 aaPredicted RBP12.29□□□□□ -0.44
CSMD1-213ENST00000523488 TOP2BQ02880 1626 aa12.28□□□□□ -0.44
CSMD1-213ENST00000523488 APLP2Q06481 763 aa12.28□□□□□ -0.44
CSMD1-213ENST00000523488 CSRNP3Q8WYN3 585 aa12.27□□□□□ -0.45
CSMD1-213ENST00000523488 FANCIQ9NVI1 1328 aa12.26□□□□□ -0.45
CSMD1-213ENST00000523488 CFAP43Q8NDM7 1665 aa12.26□□□□□ -0.45
CSMD1-213ENST00000523488 RUSC2Q8N2Y8 1516 aa12.25□□□□□ -0.45
CSMD1-213ENST00000523488 ARAP1Q96P48 1450 aa12.23□□□□□ -0.45
CSMD1-213ENST00000523488 PRDM2Q13029 1718 aa12.22□□□□□ -0.45
CSMD1-213ENST00000523488 PRKCSHP14314 528 aaPredicted RBP12.22□□□□□ -0.45
CSMD1-213ENST00000523488 NCAPD3P42695 1498 aa12.2□□□□□ -0.46
CSMD1-213ENST00000523488 MYT1LQ9UL68 1186 aa12.2□□□□□ -0.46
CSMD1-213ENST00000523488 ABCA5Q8WWZ7 1642 aa12.2□□□□□ -0.46
CSMD1-213ENST00000523488 PRXQ9BXM0 1461 aa12.19□□□□□ -0.46
CSMD1-213ENST00000523488 KDM5BQ9UGL1 1544 aa12.17□□□□□ -0.46
CSMD1-213ENST00000523488 ERICH6Q7L0X2 663 aa12.15□□□□□ -0.46
CSMD1-213ENST00000523488 MSH5O43196 834 aa12.11□□□□□ -0.47
CSMD1-213ENST00000523488 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.08□□□□□ -0.48
CSMD1-213ENST00000523488 ERICH6BQ5W0A0 696 aa12.08□□□□□ -0.48
CSMD1-213ENST00000523488 RBM19Q9Y4C8 960 aaKnown RBP12.07□□□□□ -0.48
CSMD1-213ENST00000523488 TIAM1Q13009 1591 aa12.07□□□□□ -0.48
CSMD1-213ENST00000523488 WDR97A6NE52 1622 aa12.07□□□□□ -0.48
CSMD1-213ENST00000523488 RAPGEF2Q9Y4G8 1499 aa12.07□□□□□ -0.48
CSMD1-213ENST00000523488 CCER2I3L3R5 266 aa12.06□□□□□ -0.48
CSMD1-213ENST00000523488 BICRAQ9NZM4 1560 aa12.04□□□□□ -0.48
CSMD1-213ENST00000523488 NCOA2Q15596 1464 aa12.04□□□□□ -0.48
CSMD1-213ENST00000523488 TIMELESSQ9UNS1 1208 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms