Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC9.64□□□□□ -0.87
USH2AO75445 P4HB-223ENST00000576390 439 ntTSL 4 BASIC9.64□□□□□ -0.87
USH2AO75445 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC9.64□□□□□ -0.87
USH2AO75445 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 ST7-202ENST00000323984 2142 ntTSL 5 BASIC9.64□□□□□ -0.87
USH2AO75445 ST7-207ENST00000393449 2127 ntTSL 5 BASIC9.64□□□□□ -0.87
USH2AO75445 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC9.64□□□□□ -0.87
USH2AO75445 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC9.64□□□□□ -0.87
USH2AO75445 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC9.64□□□□□ -0.87
USH2AO75445 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC9.64□□□□□ -0.87
USH2AO75445 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC9.64□□□□□ -0.87
USH2AO75445 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC9.64□□□□□ -0.87
USH2AO75445 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC9.64□□□□□ -0.87
USH2AO75445 AC069544.1-201ENST00000609399 999 ntBASIC9.64□□□□□ -0.87
USH2AO75445 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
USH2AO75445 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
USH2AO75445 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 SERPINH1P1-201ENST00000419794 1249 ntBASIC9.63□□□□□ -0.87
USH2AO75445 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC9.63□□□□□ -0.87
USH2AO75445 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC9.63□□□□□ -0.87
USH2AO75445 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC9.63□□□□□ -0.87
USH2AO75445 LSM12P1-201ENST00000411836 588 ntBASIC9.63□□□□□ -0.87
USH2AO75445 DHDH-203ENST00000522614 776 ntTSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 PNMA6B-201ENST00000538162 1200 ntBASIC9.63□□□□□ -0.87
USH2AO75445 AL049597.2-201ENST00000565575 961 ntBASIC9.63□□□□□ -0.87
USH2AO75445 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC9.63□□□□□ -0.87
USH2AO75445 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC9.63□□□□□ -0.87
USH2AO75445 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC9.63□□□□□ -0.87
USH2AO75445 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC9.63□□□□□ -0.87
USH2AO75445 AC113347.1-201ENST00000413321 391 ntBASIC9.63□□□□□ -0.87
USH2AO75445 USF2-205ENST00000594064 1179 ntTSL 2 BASIC9.63□□□□□ -0.87
USH2AO75445 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
USH2AO75445 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC9.63□□□□□ -0.87
USH2AO75445 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
USH2AO75445 OXCT2P1-201ENST00000447263 1535 ntBASIC9.63□□□□□ -0.87
USH2AO75445 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
USH2AO75445 NME6-213ENST00000451657 871 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 RNF146-204ENST00000476956 884 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 AC145285.6-201ENST00000604632 637 ntBASIC9.62□□□□□ -0.87
USH2AO75445 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC9.62□□□□□ -0.87
USH2AO75445 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC9.62□□□□□ -0.87
USH2AO75445 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC9.62□□□□□ -0.87
USH2AO75445 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC9.62□□□□□ -0.87
USH2AO75445 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
USH2AO75445 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
USH2AO75445 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 KRT18P57-201ENST00000443599 1254 ntBASIC9.62□□□□□ -0.87
USH2AO75445 AC138907.5-202ENST00000569484 235 ntBASIC9.62□□□□□ -0.87
USH2AO75445 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
USH2AO75445 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC9.62□□□□□ -0.87
USH2AO75445 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC9.62□□□□□ -0.87
USH2AO75445 MIR6786-201ENST00000616843 113 ntBASIC9.62□□□□□ -0.87
USH2AO75445 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.87
USH2AO75445 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC9.62□□□□□ -0.87
USH2AO75445 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC9.62□□□□□ -0.87
USH2AO75445 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC9.62□□□□□ -0.87
USH2AO75445 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC9.61□□□□□ -0.87
USH2AO75445 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC9.61□□□□□ -0.87
USH2AO75445 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC9.61□□□□□ -0.87
USH2AO75445 KRT18P56-201ENST00000507275 550 ntBASIC9.61□□□□□ -0.87
USH2AO75445 RBM42-202ENST00000586618 771 ntTSL 3 BASIC9.61□□□□□ -0.87
USH2AO75445 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC9.61□□□□□ -0.87
USH2AO75445 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC9.61□□□□□ -0.87
USH2AO75445 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC9.61□□□□□ -0.87
USH2AO75445 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC9.61□□□□□ -0.87
USH2AO75445 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC9.61□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms