Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC29.57■■■□□ 2.32
BRD4O60885 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
BRD4O60885 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
BRD4O60885 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
BRD4O60885 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
BRD4O60885 OAS3-207ENST00000551007 998 ntTSL 2 BASIC29.57■■■□□ 2.32
BRD4O60885 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC29.57■■■□□ 2.32
BRD4O60885 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
BRD4O60885 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
BRD4O60885 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
BRD4O60885 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
BRD4O60885 KRT18P20-201ENST00000548986 1279 ntBASIC29.56■■■□□ 2.32
BRD4O60885 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC29.56■■■□□ 2.32
BRD4O60885 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
BRD4O60885 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC29.56■■■□□ 2.32
BRD4O60885 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC29.56■■■□□ 2.32
BRD4O60885 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC29.56■■■□□ 2.32
BRD4O60885 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
BRD4O60885 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
BRD4O60885 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
BRD4O60885 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC29.55■■■□□ 2.32
BRD4O60885 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
BRD4O60885 AC007322.1-201ENST00000426983 750 ntBASIC29.55■■■□□ 2.32
BRD4O60885 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC29.55■■■□□ 2.32
BRD4O60885 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC29.55■■■□□ 2.32
BRD4O60885 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC29.55■■■□□ 2.32
BRD4O60885 AP001160.3-201ENST00000601484 763 ntBASIC29.55■■■□□ 2.32
BRD4O60885 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC29.55■■■□□ 2.32
BRD4O60885 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
BRD4O60885 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
BRD4O60885 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC29.55■■■□□ 2.32
BRD4O60885 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC29.54■■■□□ 2.32
BRD4O60885 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC29.54■■■□□ 2.32
BRD4O60885 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
BRD4O60885 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC29.54■■■□□ 2.32
BRD4O60885 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
BRD4O60885 METTL15-202ENST00000403099 795 ntTSL 5 BASIC29.54■■■□□ 2.32
BRD4O60885 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC29.54■■■□□ 2.32
BRD4O60885 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC29.54■■■□□ 2.32
BRD4O60885 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
BRD4O60885 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC29.54■■■□□ 2.32
BRD4O60885 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
BRD4O60885 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC29.54■■■□□ 2.32
BRD4O60885 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
BRD4O60885 AC010141.2-201ENST00000452426 721 ntBASIC29.53■■■□□ 2.32
BRD4O60885 AC079089.2-201ENST00000531211 1277 ntBASIC29.53■■■□□ 2.32
BRD4O60885 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC29.53■■■□□ 2.32
BRD4O60885 AC138907.5-202ENST00000569484 235 ntBASIC29.53■■■□□ 2.32
BRD4O60885 AC005181.1-201ENST00000604782 1256 ntBASIC29.53■■■□□ 2.32
BRD4O60885 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
BRD4O60885 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
BRD4O60885 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC29.53■■■□□ 2.32
BRD4O60885 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
BRD4O60885 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
BRD4O60885 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
BRD4O60885 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC29.52■■■□□ 2.32
BRD4O60885 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC29.52■■■□□ 2.32
BRD4O60885 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC29.52■■■□□ 2.32
BRD4O60885 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC29.52■■■□□ 2.32
BRD4O60885 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC29.52■■■□□ 2.32
BRD4O60885 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC29.52■■■□□ 2.32
BRD4O60885 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC29.52■■■□□ 2.32
BRD4O60885 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC29.52■■■□□ 2.32
BRD4O60885 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
BRD4O60885 AC083906.2-201ENST00000511578 360 ntBASIC29.52■■■□□ 2.32
BRD4O60885 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC29.51■■■□□ 2.32
BRD4O60885 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC29.51■■■□□ 2.31
BRD4O60885 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC29.51■■■□□ 2.31
BRD4O60885 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
BRD4O60885 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
BRD4O60885 BRI3-207ENST00000539286 699 ntTSL 2 BASIC29.51■■■□□ 2.31
BRD4O60885 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
BRD4O60885 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
BRD4O60885 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC29.5■■■□□ 2.31
BRD4O60885 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC29.5■■■□□ 2.31
BRD4O60885 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
BRD4O60885 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC29.5■■■□□ 2.31
BRD4O60885 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
BRD4O60885 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
BRD4O60885 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC29.5■■■□□ 2.31
BRD4O60885 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC29.5■■■□□ 2.31
BRD4O60885 CNN2P6-201ENST00000439038 900 ntBASIC29.5■■■□□ 2.31
BRD4O60885 SERP1-208ENST00000491660 830 ntTSL 2 BASIC29.5■■■□□ 2.31
BRD4O60885 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC29.5■■■□□ 2.31
BRD4O60885 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
BRD4O60885 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
BRD4O60885 AC092053.2-201ENST00000640557 1818 ntBASIC29.5■■■□□ 2.31
BRD4O60885 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
BRD4O60885 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
BRD4O60885 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
BRD4O60885 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
BRD4O60885 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms