Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB3O15347 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB3O15347 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB3O15347 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB3O15347 DUX4L9-201ENST00000449051 1259 ntBASIC17.11■□□□□ 0.33
HMGB3O15347 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HMGB3O15347 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
HMGB3O15347 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC17.11■□□□□ 0.33
HMGB3O15347 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB3O15347 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.11■□□□□ 0.33
HMGB3O15347 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB3O15347 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HMGB3O15347 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HMGB3O15347 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HMGB3O15347 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB3O15347 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
HMGB3O15347 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HMGB3O15347 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB3O15347 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
HMGB3O15347 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC17.1■□□□□ 0.33
HMGB3O15347 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC17.1■□□□□ 0.33
HMGB3O15347 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HMGB3O15347 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
HMGB3O15347 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC17.1■□□□□ 0.33
HMGB3O15347 AC144652.1-201ENST00000609974 1624 ntBASIC17.1■□□□□ 0.33
HMGB3O15347 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HMGB3O15347 LINC01960-201ENST00000563759 1884 ntBASIC17.1■□□□□ 0.33
HMGB3O15347 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HMGB3O15347 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC17.09■□□□□ 0.33
HMGB3O15347 PVT1-219ENST00000523427 938 ntTSL 3 BASIC17.09■□□□□ 0.33
HMGB3O15347 MIR7108-201ENST00000614319 87 ntBASIC17.09■□□□□ 0.33
HMGB3O15347 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.09■□□□□ 0.33
HMGB3O15347 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HMGB3O15347 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB3O15347 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB3O15347 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB3O15347 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
HMGB3O15347 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
HMGB3O15347 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.08■□□□□ 0.32
HMGB3O15347 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB3O15347 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC17.08■□□□□ 0.32
HMGB3O15347 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB3O15347 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB3O15347 Z98882.1-201ENST00000622160 2253 ntBASIC17.08■□□□□ 0.32
HMGB3O15347 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HMGB3O15347 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HMGB3O15347 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HMGB3O15347 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGB3O15347 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HMGB3O15347 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HMGB3O15347 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HMGB3O15347 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGB3O15347 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGB3O15347 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HMGB3O15347 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HMGB3O15347 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGB3O15347 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGB3O15347 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGB3O15347 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms