Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC30.4■■■□□ 2.469e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.41■■■□□ 2.149e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC27.46■■□□□ 1.999e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC26.4■■□□□ 1.829e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.89e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.799e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-214ENST00000592483 431 ntTSL 525.17■■□□□ 1.629e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.479e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.85■■□□□ 1.419e-10■■■■□ 24.3
SF3B1O75533 CAPNS1-212ENST00000591041 812 ntTSL 323.82■■□□□ 1.49e-10■■■■□ 24.3
SF3B1O75533 AL662899.3-203ENST00000409691 1903 ntTSL 315.19■□□□□ 0.029e-10■■■■□ 24.3
SF3B1O75533 AL662899.3-202ENST00000617558 991 ntTSL 1 (best) BASIC12.56□□□□□ -0.49e-10■■■■□ 24.3
SF3B1O75533 LY6G5B-208ENST00000409525 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.459e-10■■■■□ 24.3
SF3B1O75533 LY6G5B-207ENST00000375864 2654 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.539e-10■■■■□ 24.3
SF3B1O75533 AL662899.3-201ENST00000375880 2487 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.559e-10■■■■□ 24.3
SF3B1O75533 CNOT2-243ENST00000553078 440 ntTSL 310.61□□□□□ -0.716e-7■■■■□ 24.2
SF3B1O75533 CNOT2-214ENST00000548741 536 ntTSL 49.31□□□□□ -0.926e-7■■■■□ 24.2
SF3B1O75533 GAS5-216ENST00000443799 897 ntTSL 510.4□□□□□ -0.744e-8■■■■□ 24.2
SF3B1O75533 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.85□□□□□ -1.634e-8■■■■□ 24.2
SF3B1O75533 GAS5-204ENST00000421068 1060 ntTSL 24.71□□□□□ -1.664e-8■■■■□ 24.2
SF3B1O75533 KMT2E-214ENST00000495267 1133 ntTSL 1 (best)22■■□□□ 1.111e-6■■■■□ 24.2
SF3B1O75533 LINC00854-214ENST00000615433 874 ntAPPRIS ALT2 TSL 510.22□□□□□ -0.779e-7■■■■□ 24.2
SF3B1O75533 LINC00854-204ENST00000594691 649 ntAPPRIS P5 TSL 5 BASIC9.56□□□□□ -0.889e-7■■■■□ 24.2
SF3B1O75533 U2.6-201ENST00000619225 191 ntBASIC2.18□□□□□ -2.069e-7■■■■□ 24.2
SF3B1O75533 FDFT1-207ENST00000525607 1773 ntTSL 220.24■□□□□ 0.832e-6■■■■□ 24.2
SF3B1O75533 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.69■□□□□ 0.262e-6■■■■□ 24.2
SF3B1O75533 FDFT1-218ENST00000530664 1761 ntTSL 2 BASIC13.49□□□□□ -0.252e-6■■■■□ 24.2
SF3B1O75533 FASN-210ENST00000636968 100 ntTSL 518.41■□□□□ 0.541e-6■■■■□ 24.2
SF3B1O75533 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.53■■□□□ 1.362e-7■■■■□ 24.1
SF3B1O75533 POLR3GL-203ENST00000471706 755 ntTSL 523.53■■□□□ 1.362e-7■■■■□ 24.1
SF3B1O75533 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.472e-7■■■■□ 24.1
SF3B1O75533 KHSRP-204ENST00000595112 745 ntTSL 316.92■□□□□ 0.32e-7■■■■□ 24.1
SF3B1O75533 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.75■□□□□ 0.272e-7■■■■□ 24.1
SF3B1O75533 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.242e-7■■■■□ 24.1
SF3B1O75533 POLR3GL-204ENST00000622508 1600 ntTSL 1 (best)15.65■□□□□ 0.12e-7■■■■□ 24.1
SF3B1O75533 B2M-207ENST00000559907 499 ntTSL 315.51■□□□□ 0.072e-7■■■■□ 24.1
SF3B1O75533 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.012e-7■■■■□ 24.1
SF3B1O75533 KLHL20-202ENST00000479505 450 ntTSL 214.21□□□□□ -0.132e-7■■■■□ 24.1
SF3B1O75533 ANP32B-202ENST00000473205 687 ntTSL 313.97□□□□□ -0.172e-7■■■■□ 24.1
SF3B1O75533 KLHL20-203ENST00000483154 921 ntTSL 1 (best)12.95□□□□□ -0.342e-7■■■■□ 24.1
SF3B1O75533 TMED5-203ENST00000370290 3847 ntTSL 1 (best)12.51□□□□□ -0.412e-7■■■■□ 24.1
SF3B1O75533 B2M-202ENST00000544417 933 ntTSL 5 BASIC12.44□□□□□ -0.422e-7■■■■□ 24.1
SF3B1O75533 TMED5-204ENST00000479918 1296 ntTSL 3 BASIC12.03□□□□□ -0.482e-7■■■■□ 24.1
SF3B1O75533 RPLP0-220ENST00000551217 677 nt10.61□□□□□ -0.712e-7■■■■□ 24.1
SF3B1O75533 KLHL20-201ENST00000209884 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.722e-7■■■■□ 24.1
SF3B1O75533 B2M-204ENST00000558401 1715 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.752e-7■■■■□ 24.1
SF3B1O75533 GRSF1-203ENST00000502323 1794 ntTSL 5 BASIC10.28□□□□□ -0.762e-7■■■■□ 24.1
SF3B1O75533 B2M-206ENST00000559720 1220 ntTSL 510.19□□□□□ -0.782e-7■■■■□ 24.1
SF3B1O75533 B2M-212ENST00000561424 604 ntTSL 310.19□□□□□ -0.782e-7■■■■□ 24.1
SF3B1O75533 TMED5-201ENST00000370280 750 ntTSL 2 BASIC9.74□□□□□ -0.852e-7■■■■□ 24.1
SF3B1O75533 GRSF1-205ENST00000506453 925 ntTSL 39.66□□□□□ -0.862e-7■■■■□ 24.1
SF3B1O75533 B2M-203ENST00000557901 407 ntTSL 1 (best)8.77□□□□□ -1.012e-7■■■■□ 24.1
SF3B1O75533 NELFCD-206ENST00000478389 3581 ntTSL 28.69□□□□□ -1.022e-7■■■■□ 24.1
SF3B1O75533 EIF4G2-227ENST00000533485 806 ntTSL 28.29□□□□□ -1.082e-13■■■■□ 24.1
SF3B1O75533 B2M-213ENST00000623550 2329 nt7.45□□□□□ -1.222e-7■■■■□ 24.1
SF3B1O75533 KLHL20-205ENST00000493170 953 ntTSL 1 (best)6.66□□□□□ -1.342e-7■■■■□ 24.1
SF3B1O75533 B2M-201ENST00000349264 732 ntTSL 36.6□□□□□ -1.352e-7■■■■□ 24.1
SF3B1O75533 B2M-205ENST00000559220 580 ntTSL 56.24□□□□□ -1.412e-7■■■■□ 24.1
SF3B1O75533 B2M-211ENST00000561139 717 ntTSL 33.9□□□□□ -1.792e-7■■■■□ 24.1
SF3B1O75533 CALR-206ENST00000588454 776 ntTSL 312.31□□□□□ -0.447e-8■■■■□ 24.1
SF3B1O75533 RAB27A-204ENST00000563262 702 ntTSL 311.43□□□□□ -0.587e-9■■■■□ 24.1
SF3B1O75533 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC7.29□□□□□ -1.247e-9■■■■□ 24.1
SF3B1O75533 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.337e-9■■■■□ 24.1
SF3B1O75533 FOCAD-212ENST00000604103 591 ntTSL 44.19□□□□□ -1.747e-9■■■■□ 24.1
SF3B1O75533 FOCAD-215ENST00000605031 556 ntTSL 42.96□□□□□ -1.937e-9■■■■□ 24.1
SF3B1O75533 WAC-211ENST00000442148 759 ntTSL 520.96■□□□□ 0.955e-6■■■■□ 24
SF3B1O75533 WAC-207ENST00000420266 784 ntTSL 515.16■□□□□ 0.025e-6■■■■□ 24
SF3B1O75533 WAC-204ENST00000375646 2176 ntTSL 5 BASIC13.09□□□□□ -0.315e-6■■■■□ 24
SF3B1O75533 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.64□□□□□ -1.515e-6■■■■□ 24
SF3B1O75533 WAC-208ENST00000424454 1330 ntTSL 25.43□□□□□ -1.545e-6■■■■□ 24
SF3B1O75533 WAC-210ENST00000439676 2762 ntTSL 55.17□□□□□ -1.585e-6■■■■□ 24
SF3B1O75533 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.67□□□□□ -1.665e-6■■■■□ 24
SF3B1O75533 WAC-201ENST00000345541 4526 ntTSL 1 (best)4.37□□□□□ -1.715e-6■■■■□ 24
SF3B1O75533 WAC-206ENST00000414108 816 ntTSL 33.2□□□□□ -1.95e-6■■■■□ 24
SF3B1O75533 INSIG1-204ENST00000425172 596 ntTSL 226.24■■□□□ 1.792e-6■■■■□ 23.9
SF3B1O75533 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.71■□□□□ 0.912e-6■■■■□ 23.9
SF3B1O75533 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.82■□□□□ 0.442e-6■■■■□ 23.9
SF3B1O75533 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.142e-6■■■■□ 23.9
SF3B1O75533 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.562e-7■■■■□ 23.9
SF3B1O75533 TRABD-206ENST00000472677 1661 ntTSL 1 (best)23■■□□□ 1.274e-6■■■■□ 23.9
SF3B1O75533 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.054e-6■■■■□ 23.9
SF3B1O75533 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.744e-6■■■■□ 23.9
SF3B1O75533 POLA1-203ENST00000480125 580 ntTSL 34.97□□□□□ -1.615e-6■■■■□ 23.9
SF3B1O75533 HIRA-204ENST00000464189 560 ntTSL 412.3□□□□□ -0.442e-6■■■■□ 23.9
SF3B1O75533 MAP3K4-213ENST00000542952 629 ntTSL 416.53■□□□□ 0.244e-9■■■■□ 23.9
SF3B1O75533 NUSAP1-213ENST00000560898 708 ntTSL 38.38□□□□□ -1.074e-9■■■■□ 23.9
SF3B1O75533 SETD2-203ENST00000412450 4231 ntTSL 211.57□□□□□ -0.562e-6■■■■□ 23.9
SF3B1O75533 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.757e-7■■■■□ 23.8
SF3B1O75533 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.77e-7■■■■□ 23.8
SF3B1O75533 EGFL8-221ENST00000432129 825 ntTSL 522.18■■□□□ 1.147e-7■■■■□ 23.8
SF3B1O75533 EGFL8-222ENST00000466239 2441 ntTSL 215.48■□□□□ 0.077e-7■■■■□ 23.8
SF3B1O75533 AARS-207ENST00000569825 871 ntTSL 218.49■□□□□ 0.553e-7■■■■□ 23.8
SF3B1O75533 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.41e-6■■■■□ 23.8
SF3B1O75533 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.21e-6■■■■□ 23.8
SF3B1O75533 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.111e-6■■■■□ 23.8
SF3B1O75533 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.291e-6■■■■□ 23.8
SF3B1O75533 SNHG1-203ENST00000537024 532 ntTSL 54.01□□□□□ -1.772e-7■■■■□ 23.8
SF3B1O75533 SNHG1-202ENST00000535689 550 ntTSL 23.1□□□□□ -1.912e-7■■■■□ 23.8
SF3B1O75533 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.67□□□□□ -1.982e-7■■■■□ 23.8
SF3B1O75533 RBM14-207ENST00000461478 693 ntTSL 223.1■■□□□ 1.293e-6■■■■□ 23.8
Retrieved 100 of 46,956 protein–RNA pairs in 3300.2 ms