Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 C14orf159-203ENST00000412671 2591 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.343e-8■■■■□ 26.7
SF3B1O75533 NUP214-222ENST00000530630 536 ntTSL 312.87□□□□□ -0.352e-6■■■■□ 26.7
SF3B1O75533 MKNK2-206ENST00000587416 4093 ntTSL 212.81□□□□□ -0.362e-6■■■■□ 26.7
SF3B1O75533 POLE3-202ENST00000374171 2191 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.422e-7■■■■□ 26.7
SF3B1O75533 NPLOC4-206ENST00000571714 676 ntTSL 512.35□□□□□ -0.432e-7■■■■□ 26.7
SF3B1O75533 NUP37-207ENST00000551200 1158 ntTSL 1 (best)12.34□□□□□ -0.432e-6■■■■□ 26.7
SF3B1O75533 C14orf159-234ENST00000525393 2471 ntTSL 5 BASIC12.27□□□□□ -0.443e-8■■■■□ 26.7
SF3B1O75533 C14orf159-224ENST00000522816 827 ntTSL 1 (best)12.21□□□□□ -0.453e-8■■■■□ 26.7
SF3B1O75533 SUN1-230ENST00000477950 575 ntTSL 312.08□□□□□ -0.482e-6■■■■□ 26.7
SF3B1O75533 C14orf159-226ENST00000523461 2435 ntTSL 212.07□□□□□ -0.483e-8■■■■□ 26.7
SF3B1O75533 POLE3-201ENST00000374169 2109 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.512e-7■■■■□ 26.7
SF3B1O75533 RIT1-204ENST00000462687 548 ntTSL 311.61□□□□□ -0.553e-8■■■■□ 26.7
SF3B1O75533 C14orf159-201ENST00000256324 2967 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.573e-8■■■■□ 26.7
SF3B1O75533 TPM4-209ENST00000588483 801 ntTSL 511.48□□□□□ -0.572e-7■■■■□ 26.7
SF3B1O75533 C14orf159-223ENST00000522322 2856 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.593e-8■■■■□ 26.7
SF3B1O75533 C14orf159-204ENST00000428926 2538 ntAPPRIS P3 TSL 2 BASIC11.31□□□□□ -0.63e-8■■■■□ 26.7
SF3B1O75533 C14orf159-230ENST00000523837 2814 ntTSL 511.24□□□□□ -0.613e-8■■■■□ 26.7
SF3B1O75533 C14orf159-229ENST00000523816 2764 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.633e-8■■■■□ 26.7
SF3B1O75533 CHD3-208ENST00000470531 3744 ntTSL 210.73□□□□□ -0.692e-6■■■■□ 26.7
SF3B1O75533 C14orf159-228ENST00000523771 2976 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.693e-8■■■■□ 26.7
SF3B1O75533 C14orf159-217ENST00000520328 2687 ntTSL 2 BASIC10.7□□□□□ -0.73e-8■■■■□ 26.7
SF3B1O75533 SAE1-210ENST00000600706 744 ntTSL 510.56□□□□□ -0.722e-6■■■■□ 26.7
SF3B1O75533 THOC1-212ENST00000581269 559 ntTSL 410.47□□□□□ -0.732e-6■■■■□ 26.7
SF3B1O75533 CLK2-204ENST00000471047 701 ntTSL 310.39□□□□□ -0.754e-9■■■■□ 26.7
SF3B1O75533 C14orf159-211ENST00000518868 3075 ntAPPRIS ALT1 TSL 2 BASIC10.23□□□□□ -0.773e-8■■■■□ 26.7
SF3B1O75533 NPLOC4-219ENST00000576713 571 ntTSL 510.22□□□□□ -0.772e-7■■■■□ 26.7
SF3B1O75533 THOC1-211ENST00000581116 588 ntTSL 310.22□□□□□ -0.772e-6■■■■□ 26.7
SF3B1O75533 NPLOC4-210ENST00000572824 559 ntTSL 410.13□□□□□ -0.792e-7■■■■□ 26.7
SF3B1O75533 H2AFY-205ENST00000451949 1744 ntTSL 210.04□□□□□ -0.82e-7■■■■□ 26.7
SF3B1O75533 H2AFY-220ENST00000513268 501 ntTSL 39.95□□□□□ -0.822e-7■■■■□ 26.7
SF3B1O75533 NUP37-205ENST00000548994 382 ntTSL 39.86□□□□□ -0.832e-6■■■■□ 26.7
SF3B1O75533 TAL1-204ENST00000464796 237 ntTSL 1 (best)9.67□□□□□ -0.866e-6■■■■□ 26.7
SF3B1O75533 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.872e-6■■■■□ 26.7
SF3B1O75533 NCOA1-204ENST00000405141 7405 ntAPPRIS ALT2 TSL 5 BASIC9.44□□□□□ -0.92e-7■■■■□ 26.7
SF3B1O75533 THOC1-214ENST00000582313 1811 ntTSL 59.43□□□□□ -0.92e-6■■■■□ 26.7
SF3B1O75533 KIF23-204ENST00000558303 1766 ntTSL 29.31□□□□□ -0.922e-6■■■■□ 26.7
SF3B1O75533 H2AFY-216ENST00000511494 2521 ntTSL 28.98□□□□□ -0.972e-7■■■■□ 26.7
SF3B1O75533 NPLOC4-211ENST00000573212 564 ntTSL 48.97□□□□□ -0.972e-7■■■■□ 26.7
SF3B1O75533 KIF23-212ENST00000560125 532 ntTSL 58.84□□□□□ -0.992e-6■■■■□ 26.7
SF3B1O75533 SUGP2-207ENST00000597095 536 ntTSL 28.79□□□□□ -14e-9■■■■□ 26.7
SF3B1O75533 NUP37-209ENST00000552283 2372 ntAPPRIS P1 TSL 5 BASIC8.73□□□□□ -1.012e-6■■■■□ 26.7
SF3B1O75533 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.012e-7■■■■□ 26.7
SF3B1O75533 NRDC-203ENST00000440943 1660 ntTSL 58.64□□□□□ -1.032e-6■■■■□ 26.7
SF3B1O75533 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.042e-6■■■■□ 26.7
SF3B1O75533 NCBP2-209ENST00000463783 4161 ntTSL 1 (best)8.55□□□□□ -1.042e-6■■■■□ 26.7
SF3B1O75533 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC8.21□□□□□ -1.13e-8■■■■□ 26.7
SF3B1O75533 RAB2A-206ENST00000481569 506 ntTSL 28.03□□□□□ -1.122e-6■■■■□ 26.7
SF3B1O75533 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC8□□□□□ -1.132e-6■■■■□ 26.7
SF3B1O75533 DMXL2-208ENST00000559498 571 ntTSL 57.27□□□□□ -1.242e-7■■■■□ 26.7
SF3B1O75533 NRDC-210ENST00000485608 3149 ntTSL 27.21□□□□□ -1.262e-6■■■■□ 26.7
SF3B1O75533 USP8-213ENST00000560885 525 ntTSL 57.15□□□□□ -1.262e-7■■■■□ 26.7
SF3B1O75533 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.282e-6■■■■□ 26.7
SF3B1O75533 PDCD6IP-215ENST00000494810 619 ntTSL 36.78□□□□□ -1.323e-8■■■■□ 26.7
SF3B1O75533 THOC1-208ENST00000580038 2033 ntTSL 56.74□□□□□ -1.332e-6■■■■□ 26.7
SF3B1O75533 HNRNPK-208ENST00000481820 957 ntTSL 25.62□□□□□ -1.512e-7■■■■□ 26.7
SF3B1O75533 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.532e-6■■■■□ 26.7
SF3B1O75533 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.42□□□□□ -1.542e-7■■■■□ 26.7
SF3B1O75533 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.43□□□□□ -1.72e-6■■■■□ 26.7
SF3B1O75533 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.28□□□□□ -1.722e-6■■■■□ 26.7
SF3B1O75533 RBM6-208ENST00000438912 473 ntTSL 54.19□□□□□ -1.747e-11■■■■□ 26.7
SF3B1O75533 USP8-207ENST00000559242 432 ntTSL 54.04□□□□□ -1.762e-7■■■■□ 26.7
SF3B1O75533 BLM-209ENST00000560559 747 ntTSL 33.97□□□□□ -1.774e-9■■■■□ 26.7
SF3B1O75533 THOC1-206ENST00000579232 2277 ntTSL 53.72□□□□□ -1.812e-6■■■■□ 26.7
SF3B1O75533 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.45□□□□□ -1.862e-6■■■■□ 26.7
SF3B1O75533 NUP37-202ENST00000543021 784 ntTSL 23.28□□□□□ -1.882e-6■■■■□ 26.7
SF3B1O75533 USP8-217ENST00000561211 609 ntTSL 53.09□□□□□ -1.912e-7■■■■□ 26.7
SF3B1O75533 HNRNPK-210ENST00000492865 528 ntTSL 23.03□□□□□ -1.922e-7■■■■□ 26.7
SF3B1O75533 XPO6-219ENST00000570033 558 ntTSL 42.9□□□□□ -1.953e-8■■■■□ 26.7
SF3B1O75533 PPP4R2-204ENST00000476505 323 ntTSL 52.79□□□□□ -1.963e-8■■■■□ 26.7
SF3B1O75533 RAB2A-203ENST00000429861 594 ntTSL 22.44□□□□□ -2.022e-6■■■■□ 26.7
SF3B1O75533 XIAP-204ENST00000430625 528 ntTSL 31.89□□□□□ -2.112e-6■■■■□ 26.7
SF3B1O75533 RIF1-202ENST00000414861 2534 ntTSL 1 (best)10.28□□□□□ -0.762e-6■■■■□ 26.7
SF3B1O75533 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.631e-6■■■■□ 26.7
SF3B1O75533 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.421e-6■■■■□ 26.7
SF3B1O75533 MBNL1-212ENST00000464596 989 ntTSL 59.49□□□□□ -0.894e-6■■■■□ 26.6
SF3B1O75533 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC7.65□□□□□ -1.184e-6■■■■□ 26.6
SF3B1O75533 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC7.29□□□□□ -1.244e-6■■■■□ 26.6
SF3B1O75533 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC7.29□□□□□ -1.244e-6■■■■□ 26.6
SF3B1O75533 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.714e-6■■■■□ 26.6
SF3B1O75533 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.74□□□□□ -1.814e-6■■■■□ 26.6
SF3B1O75533 YY1AP1-217ENST00000443231 932 ntAPPRIS ALT2 TSL 317.55■□□□□ 0.49e-7■■■■□ 26.6
SF3B1O75533 YY1AP1-221ENST00000476093 1037 ntTSL 316.74■□□□□ 0.279e-7■■■■□ 26.6
SF3B1O75533 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.241e-7■■■■□ 26.6
SF3B1O75533 ARRDC3-203ENST00000505631 475 ntTSL 21.99□□□□□ -2.091e-7■■■■□ 26.6
SF3B1O75533 EIF4A2-222ENST00000492144 993 ntTSL 25.74□□□□□ -1.497e-8■■■■□ 26.6
SF3B1O75533 EIF4A2-226ENST00000497177 849 ntTSL 55.19□□□□□ -1.587e-8■■■■□ 26.6
SF3B1O75533 EIF4A2-216ENST00000468362 1356 ntTSL 25.16□□□□□ -1.587e-8■■■■□ 26.6
SF3B1O75533 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.082e-6■■■■□ 26.5
SF3B1O75533 SUGP2-204ENST00000593795 747 ntTSL 515.12■□□□□ 0.012e-6■■■■□ 26.5
SF3B1O75533 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.222e-6■■■■□ 26.5
SF3B1O75533 SUGP2-201ENST00000330854 3629 ntTSL 1 (best)9.92□□□□□ -0.822e-6■■■■□ 26.5
SF3B1O75533 SUGP2-206ENST00000594773 4169 ntTSL 29.89□□□□□ -0.832e-6■■■■□ 26.5
SF3B1O75533 PRSS21-208ENST00000575199 679 ntTSL 223.37■■□□□ 1.332e-6■■■■□ 26.5
SF3B1O75533 PRSS21-210ENST00000577043 814 ntTSL 520.32■□□□□ 0.842e-6■■■■□ 26.5
SF3B1O75533 MPP1-218ENST00000494170 969 ntTSL 316.26■□□□□ 0.191e-6■■■■□ 26.5
SF3B1O75533 MPP1-212ENST00000475943 860 ntTSL 1 (best)15.55■□□□□ 0.081e-6■■■■□ 26.5
SF3B1O75533 MPP1-209ENST00000453245 729 ntTSL 514.46□□□□□ -0.091e-6■■■■□ 26.5
SF3B1O75533 MPP1-203ENST00000393529 794 ntTSL 59.46□□□□□ -0.91e-6■■■■□ 26.5
SF3B1O75533 RPL18-211ENST00000550973 1111 ntTSL 522.41■■□□□ 1.183e-10■■■■□ 26.5
SF3B1O75533 RPL18-201ENST00000084795 612 ntTSL 1 (best)18.99■□□□□ 0.633e-10■■■■□ 26.5
Retrieved 100 of 46,956 protein–RNA pairs in 3239.6 ms