RNA–Protein interactions for RNA: ENST00000560885.5

USP8-213, Transcript of ubiquitin specific peptidase 8, humanhuman

TSL 5

Gene USP8, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP8-213ENST00000560885 AEBP2Q6ZN18 517 aaPredicted RBP21.7■■□□□ 1.06
USP8-213ENST00000560885 CHIC1Q5VXU3 224 aa20.45■□□□□ 0.86
USP8-213ENST00000560885 SENP3Q9H4L4 574 aaPredicted RBP18.73■□□□□ 0.59
USP8-213ENST00000560885 PHF23Q9BUL5 403 aaPredicted RBP18.34■□□□□ 0.53
USP8-213ENST00000560885 FOXD1Q16676 465 aa17.39■□□□□ 0.37
USP8-213ENST00000560885 POTEDQ86YR6 584 aa16.73■□□□□ 0.27
USP8-213ENST00000560885 MSH5O43196 834 aa16.58■□□□□ 0.24
USP8-213ENST00000560885 NISCHQ9Y2I1 1504 aa16.4■□□□□ 0.22
USP8-213ENST00000560885 PIAS4Q8N2W9 510 aaPredicted RBP16.18■□□□□ 0.18
USP8-213ENST00000560885 PLPPR3Q6T4P5 718 aa16.1■□□□□ 0.17
USP8-213ENST00000560885 PPP6R1Q9UPN7 881 aa15.87■□□□□ 0.13
USP8-213ENST00000560885 ADRA2BP18089 450 aa15.8■□□□□ 0.12
USP8-213ENST00000560885 ABCC9O60706 1549 aa14.92□□□□□ -0.02
USP8-213ENST00000560885 CCDC180Q9P1Z9 1646 aa14.87□□□□□ -0.03
USP8-213ENST00000560885 DMRT2Q9Y5R5 561 aa14.77□□□□□ -0.05
USP8-213ENST00000560885 SCAF1Q9H7N4 1312 aaKnown RBP14.67□□□□□ -0.06
USP8-213ENST00000560885 MAPK8IP2Q13387 824 aaPredicted RBP14.6□□□□□ -0.07
USP8-213ENST00000560885 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
USP8-213ENST00000560885 RB1CC1Q8TDY2 1594 aa14.2□□□□□ -0.14
USP8-213ENST00000560885 DNAJC5BQ9UF47 199 aa14.13□□□□□ -0.15
USP8-213ENST00000560885 HOXD11P31277 338 aaPredicted RBP14.08□□□□□ -0.16
USP8-213ENST00000560885 DCAF8L1A6NGE4 600 aa14.06□□□□□ -0.16
USP8-213ENST00000560885 NACADO15069 1562 aa14.05□□□□□ -0.16
USP8-213ENST00000560885 RNF39Q9H2S5 420 aa14.04□□□□□ -0.16
USP8-213ENST00000560885 PPP4R3CPQ6ZMV5 832 aa13.99□□□□□ -0.17
USP8-213ENST00000560885 UNC13AQ9UPW8 1703 aa13.93□□□□□ -0.18
USP8-213ENST00000560885 CNKSR2Q8WXI2 1034 aa13.89□□□□□ -0.19
USP8-213ENST00000560885 RNF216Q9NWF9 866 aaPredicted RBP13.89□□□□□ -0.19
USP8-213ENST00000560885 C1QBPQ07021 282 aaKnown RBP13.88□□□□□ -0.19
USP8-213ENST00000560885 DCAF8L2P0C7V8 631 aa13.85□□□□□ -0.19
USP8-213ENST00000560885 PABPN1Q86U42 306 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP8-213ENST00000560885 MYO15BQ96JP2 1530 aa13.82□□□□□ -0.2
USP8-213ENST00000560885 BICRAQ9NZM4 1560 aa13.78□□□□□ -0.2
USP8-213ENST00000560885 SHROOM4Q9ULL8 1493 aa13.61□□□□□ -0.23
USP8-213ENST00000560885 DCAF1Q9Y4B6 1507 aa13.58□□□□□ -0.24
USP8-213ENST00000560885 ZCCHC6Q5VYS8 1495 aaKnown RBP13.55□□□□□ -0.24
USP8-213ENST00000560885 CC2D2AQ9P2K1 1620 aa13.52□□□□□ -0.25
USP8-213ENST00000560885 CECR2Q9BXF3 1484 aa13.48□□□□□ -0.25
USP8-213ENST00000560885 SCRIBQ14160 1630 aa13.46□□□□□ -0.26
USP8-213ENST00000560885 EIF4G1Q04637 1599 aaKnown RBP13.45□□□□□ -0.26
USP8-213ENST00000560885 NCBP3Q53F19 620 aaKnown RBP13.43□□□□□ -0.26
USP8-213ENST00000560885 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.36□□□□□ -0.278e-7■■□□□ 12.8
USP8-213ENST00000560885 DNAJC5Q9H3Z4 198 aa13.15□□□□□ -0.3
USP8-213ENST00000560885 NPM3O75607 178 aaKnown RBP13.13□□□□□ -0.31
USP8-213ENST00000560885 POTEHQ6S545 545 aa13.06□□□□□ -0.32
USP8-213ENST00000560885 U3KPZ7 1027 aaPredicted RBP13.03□□□□□ -0.32
USP8-213ENST00000560885 CUX2O14529 1486 aa12.99□□□□□ -0.33
USP8-213ENST00000560885 DSG3P32926 999 aa12.98□□□□□ -0.33
USP8-213ENST00000560885 NCAPD3P42695 1498 aa12.96□□□□□ -0.34
USP8-213ENST00000560885 CAPN15O75808 1086 aa12.94□□□□□ -0.34
USP8-213ENST00000560885 ERCC6Q03468 1493 aa12.91□□□□□ -0.34
USP8-213ENST00000560885 SPINK5Q9NQ38 1064 aaPredicted RBP12.89□□□□□ -0.35
USP8-213ENST00000560885 ATAD2BQ9ULI0 1458 aa12.87□□□□□ -0.35
USP8-213ENST00000560885 HMGXB3Q12766 1538 aa12.87□□□□□ -0.35
USP8-213ENST00000560885 SMARCA2P51531 1590 aa12.86□□□□□ -0.35
USP8-213ENST00000560885 SMARCA4P51532 1647 aa12.85□□□□□ -0.35
USP8-213ENST00000560885 APLP2Q06481 763 aa12.81□□□□□ -0.36
USP8-213ENST00000560885 NESP48681 1621 aa12.77□□□□□ -0.36
USP8-213ENST00000560885 BAZ1AQ9NRL2 1556 aaPredicted RBP12.76□□□□□ -0.37
USP8-213ENST00000560885 BAZ1BQ9UIG0 1483 aaKnown RBP12.75□□□□□ -0.37
USP8-213ENST00000560885 PEG3Q9GZU2 1588 aa12.74□□□□□ -0.37
USP8-213ENST00000560885 THOC2Q8NI27 1593 aaKnown RBP12.73□□□□□ -0.37
USP8-213ENST00000560885 LAMC3Q9Y6N6 1575 aa12.73□□□□□ -0.37
USP8-213ENST00000560885 ZNF219Q9P2Y4 722 aaPredicted RBP12.72□□□□□ -0.37
USP8-213ENST00000560885 KIF21AQ7Z4S6 1674 aa12.68□□□□□ -0.38
USP8-213ENST00000560885 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.67□□□□□ -0.38
USP8-213ENST00000560885 HNRNPUL2Q1KMD3 747 aaKnown RBP12.67□□□□□ -0.38
USP8-213ENST00000560885 PDS5BQ9NTI5 1447 aa12.62□□□□□ -0.39
USP8-213ENST00000560885 SLC4A2P04920 1241 aa12.62□□□□□ -0.39
USP8-213ENST00000560885 MROH2BQ7Z745 1585 aa12.61□□□□□ -0.39
USP8-213ENST00000560885 TRHP20396 242 aaPredicted RBP12.6□□□□□ -0.39
USP8-213ENST00000560885 ABCB7O75027 752 aa12.54□□□□□ -0.4
USP8-213ENST00000560885 SAMD1Q6SPF0 538 aaPredicted RBP12.54□□□□□ -0.4
USP8-213ENST00000560885 RBM42Q9BTD8 480 aaKnown RBP12.53□□□□□ -0.4
USP8-213ENST00000560885 CADPSQ9ULU8 1353 aa12.53□□□□□ -0.4
USP8-213ENST00000560885 MRC2Q9UBG0 1479 aa12.52□□□□□ -0.41
USP8-213ENST00000560885 WDR62O43379 1518 aa12.51□□□□□ -0.41
USP8-213ENST00000560885 WIZO95785 1651 aa12.48□□□□□ -0.41
USP8-213ENST00000560885 KCNA4P22459 653 aa12.47□□□□□ -0.41
USP8-213ENST00000560885 TRIM41Q8WV44 630 aa12.45□□□□□ -0.42
USP8-213ENST00000560885 CEP164Q9UPV0 1460 aa12.44□□□□□ -0.42
USP8-213ENST00000560885 FANCD2Q9BXW9 1451 aa12.4□□□□□ -0.43
USP8-213ENST00000560885 CFTRP13569 1480 aa12.37□□□□□ -0.43
USP8-213ENST00000560885 PRDM2Q13029 1718 aa12.34□□□□□ -0.43
USP8-213ENST00000560885 OSCARQ8IYS5 282 aa12.33□□□□□ -0.44
USP8-213ENST00000560885 CHRDL2Q6WN34 429 aa12.31□□□□□ -0.44
USP8-213ENST00000560885 TOP2AP11388 1531 aaKnown RBP12.31□□□□□ -0.44
USP8-213ENST00000560885 URB2Q14146 1524 aaKnown RBP12.3□□□□□ -0.44
USP8-213ENST00000560885 RSF1Q96T23 1441 aaPredicted RBP12.28□□□□□ -0.44
USP8-213ENST00000560885 MYCNP04198 464 aaPredicted RBP12.24□□□□□ -0.45
USP8-213ENST00000560885 RIMBP3CA6NJZ7 1639 aa12.22□□□□□ -0.45
USP8-213ENST00000560885 RIMBP3BA6NNM3 1639 aa12.22□□□□□ -0.45
USP8-213ENST00000560885 RIMBP3Q9UFD9 1639 aa12.22□□□□□ -0.45
USP8-213ENST00000560885 POLA2Q14181 598 aa12.19□□□□□ -0.46
USP8-213ENST00000560885 IFT140Q96RY7 1462 aa12.19□□□□□ -0.46
USP8-213ENST00000560885 ZNF608Q9ULD9 1512 aaPredicted RBP12.16□□□□□ -0.46
USP8-213ENST00000560885 ARHGEF11O15085 1522 aa12.15□□□□□ -0.46
USP8-213ENST00000560885 CCDC88BA6NC98 1476 aa12.14□□□□□ -0.47
USP8-213ENST00000560885 ABCC8Q09428 1581 aa12.14□□□□□ -0.47
USP8-213ENST00000560885 TOPBP1Q92547 1522 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms