Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AL356441.2-201ENST00000443009 864 ntBASIC20.87■□□□□ 0.93
PKNOX1P55347 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PKNOX1P55347 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.87■□□□□ 0.93
PKNOX1P55347 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.87■□□□□ 0.93
PKNOX1P55347 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.87■□□□□ 0.93
PKNOX1P55347 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PKNOX1P55347 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
PKNOX1P55347 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.87■□□□□ 0.93
PKNOX1P55347 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PKNOX1P55347 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.86■□□□□ 0.93
PKNOX1P55347 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PKNOX1P55347 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PKNOX1P55347 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.86■□□□□ 0.93
PKNOX1P55347 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.86■□□□□ 0.93
PKNOX1P55347 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.86■□□□□ 0.93
PKNOX1P55347 DUX4L19-201ENST00000557448 1267 ntBASIC20.86■□□□□ 0.93
PKNOX1P55347 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.86■□□□□ 0.93
PKNOX1P55347 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.86■□□□□ 0.93
PKNOX1P55347 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PKNOX1P55347 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PKNOX1P55347 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PKNOX1P55347 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PKNOX1P55347 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PKNOX1P55347 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PKNOX1P55347 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PKNOX1P55347 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PKNOX1P55347 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
PKNOX1P55347 OXCT2P1-201ENST00000447263 1535 ntBASIC20.85■□□□□ 0.93
PKNOX1P55347 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PKNOX1P55347 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PKNOX1P55347 AC010525.1-201ENST00000585559 441 ntBASIC20.85■□□□□ 0.93
PKNOX1P55347 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PKNOX1P55347 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.85■□□□□ 0.93
PKNOX1P55347 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PKNOX1P55347 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
PKNOX1P55347 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PKNOX1P55347 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PKNOX1P55347 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PKNOX1P55347 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
PKNOX1P55347 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PKNOX1P55347 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PKNOX1P55347 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PKNOX1P55347 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PKNOX1P55347 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
PKNOX1P55347 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PKNOX1P55347 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PKNOX1P55347 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.84■□□□□ 0.93
PKNOX1P55347 AC104564.3-201ENST00000582367 638 ntBASIC20.84■□□□□ 0.93
PKNOX1P55347 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.84■□□□□ 0.93
PKNOX1P55347 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PKNOX1P55347 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PKNOX1P55347 SYT6-210ENST00000641643 1587 ntBASIC20.84■□□□□ 0.93
PKNOX1P55347 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PKNOX1P55347 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PKNOX1P55347 Z98882.1-201ENST00000622160 2253 ntBASIC20.83■□□□□ 0.93
PKNOX1P55347 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PKNOX1P55347 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
PKNOX1P55347 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.83■□□□□ 0.93
PKNOX1P55347 AF106564.1-201ENST00000607058 2553 ntBASIC20.83■□□□□ 0.93
PKNOX1P55347 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PKNOX1P55347 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PKNOX1P55347 SERBP1P1-201ENST00000396021 1160 ntBASIC20.83■□□□□ 0.93
PKNOX1P55347 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.83■□□□□ 0.93
PKNOX1P55347 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PKNOX1P55347 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PKNOX1P55347 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
PKNOX1P55347 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.83■□□□□ 0.92
PKNOX1P55347 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.82■□□□□ 0.92
PKNOX1P55347 AL157384.1-201ENST00000445995 2473 ntBASIC20.82■□□□□ 0.92
PKNOX1P55347 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
PKNOX1P55347 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.82■□□□□ 0.92
PKNOX1P55347 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.82■□□□□ 0.92
PKNOX1P55347 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
PKNOX1P55347 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
PKNOX1P55347 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PKNOX1P55347 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.81■□□□□ 0.92
PKNOX1P55347 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.81■□□□□ 0.92
PKNOX1P55347 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
PKNOX1P55347 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PKNOX1P55347 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PKNOX1P55347 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
PKNOX1P55347 AC011298.3-201ENST00000615796 283 ntBASIC20.81■□□□□ 0.92
PKNOX1P55347 AC136469.2-201ENST00000623944 1028 ntBASIC20.81■□□□□ 0.92
PKNOX1P55347 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.81■□□□□ 0.92
PKNOX1P55347 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms