Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 FN1-209ENST00000432072 7759 ntTSL 1 (best) BASIC9.85□□□□□ -0.833e-8■■■□□ 18.7
SMNDC1O75940 EGFL7-207ENST00000492862 723 ntTSL 516.32■□□□□ 0.23e-7■■■□□ 18.7
SMNDC1O75940 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.493e-6■■■□□ 18.7
SMNDC1O75940 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.783e-6■■■□□ 18.7
SMNDC1O75940 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.673e-6■■■□□ 18.7
SMNDC1O75940 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.033e-6■■■□□ 18.7
SMNDC1O75940 PIP5K1C-204ENST00000587482 1311 ntTSL 514.6□□□□□ -0.073e-6■■■□□ 18.7
SMNDC1O75940 GATA2-205ENST00000492608 844 ntTSL 317.35■□□□□ 0.374e-7■■■□□ 18.6
SMNDC1O75940 GATA2-206ENST00000498200 563 ntTSL 216.74■□□□□ 0.274e-7■■■□□ 18.6
SMNDC1O75940 PTBP1-207ENST00000585932 1030 ntTSL 318.66■□□□□ 0.582e-6■■■□□ 18.6
SMNDC1O75940 PTBP1-219ENST00000621737 1125 ntTSL 517.69■□□□□ 0.422e-6■■■□□ 18.6
SMNDC1O75940 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.232e-6■■■□□ 18.6
SMNDC1O75940 HNRNPH1-240ENST00000521720 539 ntTSL 314.84□□□□□ -0.033e-15■■■□□ 18.6
SMNDC1O75940 HNRNPH1-246ENST00000523449 793 ntTSL 311.77□□□□□ -0.533e-15■■■□□ 18.6
SMNDC1O75940 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.182e-14■■■□□ 18.6
SMNDC1O75940 DOCK5-205ENST00000467709 4844 ntTSL 57.48□□□□□ -1.212e-14■■■□□ 18.6
SMNDC1O75940 STAG3L5P-PVRIG2P-PILRB-202ENST00000444874 2661 ntTSL 214.67□□□□□ -0.068e-10■■■□□ 18.6
SMNDC1O75940 STAG3L5P-PVRIG2P-PILRB-201ENST00000310771 3634 ntTSL 2 BASIC11.96□□□□□ -0.58e-10■■■□□ 18.6
SMNDC1O75940 STAG3L5P-PVRIG2P-PILRB-204ENST00000472646 553 ntTSL 510.34□□□□□ -0.758e-10■■■□□ 18.6
SMNDC1O75940 TNPO2-212ENST00000588491 737 ntTSL 514.56□□□□□ -0.081e-15■■■□□ 18.6
SMNDC1O75940 CLCN7-209ENST00000565092 2740 ntTSL 216.91■□□□□ 0.38e-9■■■□□ 18.6
SMNDC1O75940 LRCH4-205ENST00000485554 774 ntTSL 316.15■□□□□ 0.187e-14■■■□□ 18.5
SMNDC1O75940 AC009078.3-201ENST00000624205 4084 ntBASIC12.14□□□□□ -0.475e-7■■■□□ 18.5
SMNDC1O75940 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.36■□□□□ 0.851e-9■■■□□ 18.5
SMNDC1O75940 MIR17HG-203ENST00000582141 2845 ntTSL 1 (best)18.7■□□□□ 0.581e-9■■■□□ 18.5
SMNDC1O75940 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.753e-7■■■□□ 18.5
SMNDC1O75940 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.73e-7■■■□□ 18.5
SMNDC1O75940 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.223e-7■■■□□ 18.5
SMNDC1O75940 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.178e-8■■■□□ 18.5
SMNDC1O75940 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.72■□□□□ 0.598e-8■■■□□ 18.5
SMNDC1O75940 KCNN4-208ENST00000601549 1093 ntTSL 315.96■□□□□ 0.158e-8■■■□□ 18.5
SMNDC1O75940 KCNN4-203ENST00000598836 1003 ntTSL 515.79■□□□□ 0.128e-8■■■□□ 18.5
SMNDC1O75940 KCNN4-205ENST00000599720 983 ntTSL 515.68■□□□□ 0.18e-8■■■□□ 18.5
SMNDC1O75940 KCNN4-206ENST00000600408 648 ntTSL 215.55■□□□□ 0.088e-8■■■□□ 18.5
SMNDC1O75940 KCNN4-202ENST00000597184 631 ntTSL 210.27□□□□□ -0.778e-8■■■□□ 18.5
SMNDC1O75940 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.56□□□□□ -0.243e-8■■■□□ 18.5
SMNDC1O75940 TCF25-221ENST00000568409 857 ntTSL 312.36□□□□□ -0.438e-7■■■□□ 18.4
SMNDC1O75940 KIAA0100-202ENST00000528896 7407 ntAPPRIS P2 TSL 1 (best) BASIC9.08□□□□□ -0.961e-7■■■□□ 18.4
SMNDC1O75940 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.071e-7■■■□□ 18.4
SMNDC1O75940 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.11e-7■■■□□ 18.4
SMNDC1O75940 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.04□□□□□ -0.161e-323■■■□□ 18.4
SMNDC1O75940 KIAA0907-203ENST00000368321 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.571e-75■■■□□ 18.4
SMNDC1O75940 KIAA0907-202ENST00000368320 4499 ntTSL 1 (best) BASIC10.68□□□□□ -0.71e-75■■■□□ 18.4
SMNDC1O75940 KIAA0907-208ENST00000482337 1135 ntTSL 1 (best)9.12□□□□□ -0.951e-323■■■□□ 18.4
SMNDC1O75940 SCARNA4-201ENST00000629045 128 ntBASIC4.53□□□□□ -1.681e-323■■■□□ 18.4
SMNDC1O75940 SCARNA4-202ENST00000625402 129 ntBASIC4.49□□□□□ -1.691e-323■■■□□ 18.4
SMNDC1O75940 LINC02001-201ENST00000592381 1298 ntTSL 213.33□□□□□ -0.286e-26■■■□□ 18.4
SMNDC1O75940 LINC02001-202ENST00000638682 1504 ntTSL 5 BASIC10.22□□□□□ -0.776e-26■■■□□ 18.4
SMNDC1O75940 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.121e-9■■■□□ 18.4
SMNDC1O75940 SIRT1-205ENST00000473922 576 ntTSL 421.29■■□□□ 11e-9■■■□□ 18.4
SMNDC1O75940 PPP2R3B-206ENST00000477110 5802 ntTSL 1 (best)19.53■□□□□ 0.721e-9■■■□□ 18.4
SMNDC1O75940 PPP2R3B-208ENST00000479438 1090 ntTSL 218.64■□□□□ 0.571e-9■■■□□ 18.4
SMNDC1O75940 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.561e-9■■■□□ 18.4
SMNDC1O75940 PPP2R3B-209ENST00000484364 732 ntTSL 216.19■□□□□ 0.181e-9■■■□□ 18.4
SMNDC1O75940 PPP2R3B-204ENST00000468169 713 ntTSL 312.62□□□□□ -0.391e-9■■■□□ 18.4
SMNDC1O75940 SIRT1-204ENST00000432464 3587 ntTSL 5 BASIC12.31□□□□□ -0.441e-9■■■□□ 18.4
SMNDC1O75940 SIRT1-206ENST00000497639 673 ntTSL 58.6□□□□□ -1.031e-9■■■□□ 18.4
SMNDC1O75940 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.19■□□□□ 0.664e-6■■■□□ 18.4
SMNDC1O75940 MED15P9-201ENST00000424716 533 ntBASIC6.95□□□□□ -1.34e-6■■■□□ 18.4
SMNDC1O75940 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.513e-9■■■□□ 18.4
SMNDC1O75940 NOL4L-207ENST00000470428 307 ntTSL 311.37□□□□□ -0.593e-9■■■□□ 18.4
SMNDC1O75940 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.352e-6■■■□□ 18.4
SMNDC1O75940 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.64□□□□□ -0.072e-6■■■□□ 18.4
SMNDC1O75940 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.86□□□□□ -0.192e-6■■■□□ 18.4
SMNDC1O75940 ZDHHC8-205ENST00000468112 524 ntTSL 312.95□□□□□ -0.342e-6■■■□□ 18.4
SMNDC1O75940 SKI-204ENST00000508416 252 ntTSL 39.41□□□□□ -0.92e-6■■■□□ 18.4
SMNDC1O75940 RHOT2-221ENST00000569358 1273 ntTSL 518.09■□□□□ 0.492e-6■■■□□ 18.3
SMNDC1O75940 RHOT2-227ENST00000602564 3695 ntTSL 515.59■□□□□ 0.092e-6■■■□□ 18.3
SMNDC1O75940 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.942e-6■■■□□ 18.3
SMNDC1O75940 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.82e-6■■■□□ 18.3
SMNDC1O75940 ZNF276-209ENST00000568295 2206 ntTSL 225.27■■□□□ 1.642e-6■■■□□ 18.3
SMNDC1O75940 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.092e-7■■■□□ 18.3
SMNDC1O75940 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.092e-7■■■□□ 18.3
SMNDC1O75940 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.26■□□□□ 0.832e-6■■■□□ 18.3
SMNDC1O75940 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.612e-7■■■□□ 18.3
SMNDC1O75940 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.54■□□□□ 0.42e-7■■■□□ 18.3
SMNDC1O75940 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.252e-7■■■□□ 18.3
SMNDC1O75940 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.252e-7■■■□□ 18.3
SMNDC1O75940 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.14■□□□□ 0.182e-6■■■□□ 18.3
SMNDC1O75940 ZNF276-204ENST00000562530 1826 ntTSL 214.69□□□□□ -0.062e-6■■■□□ 18.3
SMNDC1O75940 ZNF276-206ENST00000563983 3403 ntTSL 213.34□□□□□ -0.272e-6■■■□□ 18.3
SMNDC1O75940 KDM4B-210ENST00000592175 562 ntTSL 414.66□□□□□ -0.062e-6■■■□□ 18.3
SMNDC1O75940 C22orf34-206ENST00000444628 453 ntTSL 59.85□□□□□ -0.831e-6■■■□□ 18.3
SMNDC1O75940 SEPT9-218ENST00000587514 540 ntTSL 519.73■□□□□ 0.751e-7■■■□□ 18.3
SMNDC1O75940 SEPT9-230ENST00000590586 572 ntTSL 418.27■□□□□ 0.521e-7■■■□□ 18.3
SMNDC1O75940 ABCB6-202ENST00000295750 2238 ntTSL 518.13■□□□□ 0.492e-8■■■□□ 18.3
SMNDC1O75940 ATG9A-215ENST00000446716 5245 ntTSL 217.82■□□□□ 0.442e-8■■■□□ 18.3
SMNDC1O75940 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.352e-8■■■□□ 18.3
SMNDC1O75940 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.69■□□□□ 0.91e-7■■■□□ 18.3
SMNDC1O75940 EEF1D-222ENST00000528519 553 ntTSL 314.47□□□□□ -0.095e-7■■■□□ 18.3
SMNDC1O75940 NUBP2-205ENST00000564227 903 ntTSL 319.96■□□□□ 0.793e-6■■■□□ 18.3
SMNDC1O75940 NUBP2-212ENST00000568287 839 ntTSL 517.51■□□□□ 0.393e-6■■■□□ 18.3
SMNDC1O75940 NUBP2-203ENST00000563136 470 ntTSL 413.4□□□□□ -0.263e-6■■■□□ 18.3
SMNDC1O75940 SNORD13-201ENST00000459299 104 ntBASIC1.56□□□□□ -2.161e-323■■■□□ 18.3
SMNDC1O75940 EIF3B-212ENST00000494658 637 ntTSL 215.83■□□□□ 0.124e-12■■■□□ 18.3
SMNDC1O75940 EIF3B-207ENST00000465670 2766 ntTSL 215.8■□□□□ 0.124e-12■■■□□ 18.3
SMNDC1O75940 EIF3B-210ENST00000468611 1868 ntTSL 215.04■□□□□ -04e-12■■■□□ 18.3
SMNDC1O75940 EIF3B-211ENST00000475415 3745 ntTSL 210.76□□□□□ -0.694e-12■■■□□ 18.3
SMNDC1O75940 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.67■□□□□ 0.16e-7■■■□□ 18.2
SMNDC1O75940 THOP1-209ENST00000589087 2977 ntTSL 219.06■□□□□ 0.649e-8■■■□□ 18.2
Retrieved 100 of 11,362 protein–RNA pairs in 188.3 ms