RNA–Protein interactions for RNA: ENST00000638682.1

LINC02001-202, Transcript of long intergenic non-protein coding RNA 2001, humanhuman

TSL 5 BASIC

Gene LINC02001, Length 1,504 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02001-202ENST00000638682 AEBP2Q6ZN18 517 aaPredicted RBP31.75■■■□□ 2.67
LINC02001-202ENST00000638682 CHIC1Q5VXU3 224 aa30■■■□□ 2.39
LINC02001-202ENST00000638682 SENP3Q9H4L4 574 aaPredicted RBP27.24■■□□□ 1.95
LINC02001-202ENST00000638682 PHF23Q9BUL5 403 aaPredicted RBP26.81■■□□□ 1.88
LINC02001-202ENST00000638682 NISCHQ9Y2I1 1504 aa25.77■■□□□ 1.72
LINC02001-202ENST00000638682 FOXD1Q16676 465 aa25.34■■□□□ 1.65
LINC02001-202ENST00000638682 PLPPR3Q6T4P5 718 aa23.91■■□□□ 1.42
LINC02001-202ENST00000638682 MSH5O43196 834 aa23.9■■□□□ 1.42
LINC02001-202ENST00000638682 PIAS4Q8N2W9 510 aaPredicted RBP23.66■■□□□ 1.38
LINC02001-202ENST00000638682 POTEDQ86YR6 584 aa23.64■■□□□ 1.38
LINC02001-202ENST00000638682 PPP6R1Q9UPN7 881 aa23.48■■□□□ 1.35
LINC02001-202ENST00000638682 ADRA2BP18089 450 aa23.41■■□□□ 1.34
LINC02001-202ENST00000638682 CCDC180Q9P1Z9 1646 aa22.97■■□□□ 1.27
LINC02001-202ENST00000638682 ABCC9O60706 1549 aa22.46■■□□□ 1.19
LINC02001-202ENST00000638682 RB1CC1Q8TDY2 1594 aa21.62■■□□□ 1.05
LINC02001-202ENST00000638682 NACADO15069 1562 aa21.56■■□□□ 1.04
LINC02001-202ENST00000638682 MAPK8IP2Q13387 824 aaPredicted RBP21.56■■□□□ 1.04
LINC02001-202ENST00000638682 SCAF1Q9H7N4 1312 aaKnown RBP21.56■■□□□ 1.04
LINC02001-202ENST00000638682 DMRT2Q9Y5R5 561 aa21.53■■□□□ 1.04
LINC02001-202ENST00000638682 DCAF8L2P0C7V8 631 aa21.5■■□□□ 1.03
LINC02001-202ENST00000638682 ZCCHC6Q5VYS8 1495 aaKnown RBP21.5■■□□□ 1.03
LINC02001-202ENST00000638682 MYO15BQ96JP2 1530 aa21.4■■□□□ 1.02
LINC02001-202ENST00000638682 DCAF1Q9Y4B6 1507 aa21.32■■□□□ 1
LINC02001-202ENST00000638682 UNC13AQ9UPW8 1703 aa21.09■□□□□ 0.97
LINC02001-202ENST00000638682 SCRIBQ14160 1630 aa20.97■□□□□ 0.95
LINC02001-202ENST00000638682 PABPN1Q86U42 306 aaKnown RBP eCLIP20.93■□□□□ 0.94
LINC02001-202ENST00000638682 BICRAQ9NZM4 1560 aa20.92■□□□□ 0.94
LINC02001-202ENST00000638682 PPP4R3CPQ6ZMV5 832 aa20.89■□□□□ 0.94
LINC02001-202ENST00000638682 SHROOM4Q9ULL8 1493 aa20.75■□□□□ 0.91
LINC02001-202ENST00000638682 DCAF8L1A6NGE4 600 aa20.68■□□□□ 0.9
LINC02001-202ENST00000638682 HOXD11P31277 338 aaPredicted RBP20.65■□□□□ 0.9
LINC02001-202ENST00000638682 CACNB1Q02641 598 aaPredicted RBP20.64■□□□□ 0.9
LINC02001-202ENST00000638682 CNKSR2Q8WXI2 1034 aa20.58■□□□□ 0.89
LINC02001-202ENST00000638682 DNAJC5BQ9UF47 199 aa20.5■□□□□ 0.87
LINC02001-202ENST00000638682 RNF216Q9NWF9 866 aaPredicted RBP20.46■□□□□ 0.87
LINC02001-202ENST00000638682 EIF4G1Q04637 1599 aaKnown RBP20.39■□□□□ 0.86
LINC02001-202ENST00000638682 RNF39Q9H2S5 420 aa20.32■□□□□ 0.84
LINC02001-202ENST00000638682 CC2D2AQ9P2K1 1620 aa20.31■□□□□ 0.84
LINC02001-202ENST00000638682 CECR2Q9BXF3 1484 aa20.18■□□□□ 0.82
LINC02001-202ENST00000638682 NCBP3Q53F19 620 aaKnown RBP20.1■□□□□ 0.81
LINC02001-202ENST00000638682 C1QBPQ07021 282 aaKnown RBP20.06■□□□□ 0.8
LINC02001-202ENST00000638682 SMARCA4P51532 1647 aa20.03■□□□□ 0.8
LINC02001-202ENST00000638682 BAZ1AQ9NRL2 1556 aaPredicted RBP20.01■□□□□ 0.79
LINC02001-202ENST00000638682 SMARCA2P51531 1590 aa19.91■□□□□ 0.78
LINC02001-202ENST00000638682 ATAD2BQ9ULI0 1458 aa19.89■□□□□ 0.77
LINC02001-202ENST00000638682 SUPT5HO00267 1087 aaKnown RBP19.86■□□□□ 0.77
LINC02001-202ENST00000638682 MROH2BQ7Z745 1585 aa19.86■□□□□ 0.77
LINC02001-202ENST00000638682 NCAPD3P42695 1498 aa19.86■□□□□ 0.77
LINC02001-202ENST00000638682 HMGXB3Q12766 1538 aa19.82■□□□□ 0.76
LINC02001-202ENST00000638682 PEG3Q9GZU2 1588 aa19.81■□□□□ 0.76
LINC02001-202ENST00000638682 BAZ1BQ9UIG0 1483 aaKnown RBP19.77■□□□□ 0.75
LINC02001-202ENST00000638682 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.71■□□□□ 0.75
LINC02001-202ENST00000638682 NPM3O75607 178 aaKnown RBP19.71■□□□□ 0.75
LINC02001-202ENST00000638682 RSF1Q96T23 1441 aaPredicted RBP19.69■□□□□ 0.74
LINC02001-202ENST00000638682 WIZO95785 1651 aa19.66■□□□□ 0.74
LINC02001-202ENST00000638682 TOP2AP11388 1531 aaKnown RBP19.48■□□□□ 0.71
LINC02001-202ENST00000638682 NESP48681 1621 aa19.42■□□□□ 0.7
LINC02001-202ENST00000638682 ERCC6Q03468 1493 aa19.39■□□□□ 0.69
LINC02001-202ENST00000638682 LAMC3Q9Y6N6 1575 aa19.38■□□□□ 0.69
LINC02001-202ENST00000638682 CADPSQ9ULU8 1353 aa19.28■□□□□ 0.68
LINC02001-202ENST00000638682 PDS5BQ9NTI5 1447 aa19.23■□□□□ 0.67
LINC02001-202ENST00000638682 KIF21AQ7Z4S6 1674 aa19.21■□□□□ 0.67
LINC02001-202ENST00000638682 U3KPZ7 1027 aaPredicted RBP19.2■□□□□ 0.66
LINC02001-202ENST00000638682 CCDC88BA6NC98 1476 aa19.19■□□□□ 0.66
LINC02001-202ENST00000638682 CFTRP13569 1480 aa19.18■□□□□ 0.66
LINC02001-202ENST00000638682 THOC2Q8NI27 1593 aaKnown RBP19.17■□□□□ 0.66
LINC02001-202ENST00000638682 CUX2O14529 1486 aa19.17■□□□□ 0.66
LINC02001-202ENST00000638682 FANCD2Q9BXW9 1451 aa19.11■□□□□ 0.65
LINC02001-202ENST00000638682 CEP164Q9UPV0 1460 aa19.11■□□□□ 0.65
LINC02001-202ENST00000638682 KCNA4P22459 653 aa19.1■□□□□ 0.65
LINC02001-202ENST00000638682 PRDM2Q13029 1718 aa19.09■□□□□ 0.65
LINC02001-202ENST00000638682 MRC2Q9UBG0 1479 aa19.07■□□□□ 0.64
LINC02001-202ENST00000638682 CAPN15O75808 1086 aa19.03■□□□□ 0.64
LINC02001-202ENST00000638682 WDR62O43379 1518 aa19.01■□□□□ 0.63
LINC02001-202ENST00000638682 SPINK5Q9NQ38 1064 aaPredicted RBP18.99■□□□□ 0.63
LINC02001-202ENST00000638682 DSG3P32926 999 aa18.94■□□□□ 0.62
LINC02001-202ENST00000638682 URB2Q14146 1524 aaKnown RBP18.91■□□□□ 0.62
LINC02001-202ENST00000638682 SLC4A2P04920 1241 aa18.85■□□□□ 0.61
LINC02001-202ENST00000638682 APLP2Q06481 763 aa18.8■□□□□ 0.6
LINC02001-202ENST00000638682 TOPBP1Q92547 1522 aa18.8■□□□□ 0.6
LINC02001-202ENST00000638682 DNMBPQ6XZF7 1577 aa18.79■□□□□ 0.6
LINC02001-202ENST00000638682 ABCC8Q09428 1581 aa18.77■□□□□ 0.6
LINC02001-202ENST00000638682 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.69■□□□□ 0.58
LINC02001-202ENST00000638682 HNRNPUL2Q1KMD3 747 aaKnown RBP18.69■□□□□ 0.58
LINC02001-202ENST00000638682 IFT140Q96RY7 1462 aa18.68■□□□□ 0.58
LINC02001-202ENST00000638682 TRIM41Q8WV44 630 aa18.68■□□□□ 0.58
LINC02001-202ENST00000638682 TRHP20396 242 aaPredicted RBP18.66■□□□□ 0.58
LINC02001-202ENST00000638682 CUX1P39880 1505 aa18.66■□□□□ 0.58
LINC02001-202ENST00000638682 ZNF219Q9P2Y4 722 aaPredicted RBP18.65■□□□□ 0.58
LINC02001-202ENST00000638682 POLA1P09884 1462 aaPredicted RBP18.64■□□□□ 0.57
LINC02001-202ENST00000638682 FGD5Q6ZNL6 1462 aa18.6■□□□□ 0.57
LINC02001-202ENST00000638682 TARBP1Q13395 1621 aaKnown RBP18.58■□□□□ 0.57
LINC02001-202ENST00000638682 ZNF608Q9ULD9 1512 aaPredicted RBP18.58■□□□□ 0.56
LINC02001-202ENST00000638682 EIF4G3O43432 1585 aaKnown RBP18.57■□□□□ 0.56
LINC02001-202ENST00000638682 SAMD1Q6SPF0 538 aaPredicted RBP18.55■□□□□ 0.56
LINC02001-202ENST00000638682 RAD54L2Q9Y4B4 1467 aa18.54■□□□□ 0.56
LINC02001-202ENST00000638682 WRNQ14191 1432 aaPredicted RBP eCLIP18.54■□□□□ 0.56
LINC02001-202ENST00000638682 ABCB7O75027 752 aa18.53■□□□□ 0.56
LINC02001-202ENST00000638682 SOGA1O94964 1423 aa18.52■□□□□ 0.56
LINC02001-202ENST00000638682 SYNJ1O43426 1573 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms