Protein–RNA interactions for Protein: O43924

PDE6D, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, humanhuman

Predictions only

Length 150 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6DO43924 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDE6DO43924 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC16.54■□□□□ 0.24
PDE6DO43924 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
PDE6DO43924 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDE6DO43924 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDE6DO43924 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.54■□□□□ 0.24
PDE6DO43924 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PDE6DO43924 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PDE6DO43924 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDE6DO43924 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PDE6DO43924 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.53■□□□□ 0.24
PDE6DO43924 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PDE6DO43924 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
PDE6DO43924 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.53■□□□□ 0.24
PDE6DO43924 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.53■□□□□ 0.24
PDE6DO43924 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.53■□□□□ 0.24
PDE6DO43924 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.53■□□□□ 0.24
PDE6DO43924 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.53■□□□□ 0.24
PDE6DO43924 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
PDE6DO43924 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PDE6DO43924 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.53■□□□□ 0.24
PDE6DO43924 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PDE6DO43924 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDE6DO43924 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDE6DO43924 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDE6DO43924 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PDE6DO43924 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
PDE6DO43924 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.52■□□□□ 0.24
PDE6DO43924 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDE6DO43924 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
PDE6DO43924 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.52■□□□□ 0.24
PDE6DO43924 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC16.52■□□□□ 0.24
PDE6DO43924 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PDE6DO43924 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PDE6DO43924 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PDE6DO43924 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC16.52■□□□□ 0.24
PDE6DO43924 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC16.52■□□□□ 0.24
PDE6DO43924 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.52■□□□□ 0.24
PDE6DO43924 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.52■□□□□ 0.23
PDE6DO43924 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDE6DO43924 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDE6DO43924 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.52■□□□□ 0.23
PDE6DO43924 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDE6DO43924 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.23
PDE6DO43924 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.52■□□□□ 0.23
PDE6DO43924 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PDE6DO43924 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PDE6DO43924 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
PDE6DO43924 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDE6DO43924 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDE6DO43924 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PDE6DO43924 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDE6DO43924 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDE6DO43924 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.51■□□□□ 0.23
PDE6DO43924 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC16.51■□□□□ 0.23
PDE6DO43924 SPCS2P3-201ENST00000500401 656 ntBASIC16.51■□□□□ 0.23
PDE6DO43924 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDE6DO43924 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDE6DO43924 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
PDE6DO43924 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.51■□□□□ 0.23
PDE6DO43924 AF131216.4-201ENST00000638924 1588 ntBASIC16.51■□□□□ 0.23
PDE6DO43924 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC16.51■□□□□ 0.23
PDE6DO43924 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PDE6DO43924 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.5■□□□□ 0.23
PDE6DO43924 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.5■□□□□ 0.23
PDE6DO43924 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PDE6DO43924 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.5■□□□□ 0.23
PDE6DO43924 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PDE6DO43924 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
PDE6DO43924 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.5■□□□□ 0.23
PDE6DO43924 REST-206ENST00000612429 1376 ntTSL 5 BASIC16.5■□□□□ 0.23
PDE6DO43924 REST-207ENST00000616975 1370 ntTSL 5 BASIC16.5■□□□□ 0.23
PDE6DO43924 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PDE6DO43924 C17orf82-201ENST00000623772 1530 ntBASIC16.5■□□□□ 0.23
PDE6DO43924 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDE6DO43924 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDE6DO43924 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDE6DO43924 AL049796.1-201ENST00000565336 1766 ntBASIC16.49■□□□□ 0.23
PDE6DO43924 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDE6DO43924 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.49■□□□□ 0.23
PDE6DO43924 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDE6DO43924 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms