Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 AC053503.5-201ENST00000601508 636 ntBASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 AP006294.2-201ENST00000641667 209 ntBASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 AP004607.7-201ENST00000527152 1677 ntBASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCDHGA1Q9Y5H4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
PCDHGA1Q9Y5H4 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 LINC01124-201ENST00000409786 2117 ntBASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCDHGA1Q9Y5H4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCDHGA1Q9Y5H4 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHGA1Q9Y5H4 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms