Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
USP42Q9H9J4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC27.38■■□□□ 1.97
USP42Q9H9J4 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC27.38■■□□□ 1.97
USP42Q9H9J4 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC27.38■■□□□ 1.97
USP42Q9H9J4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC27.38■■□□□ 1.97
USP42Q9H9J4 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC27.38■■□□□ 1.97
USP42Q9H9J4 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC27.38■■□□□ 1.97
USP42Q9H9J4 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
USP42Q9H9J4 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC27.38■■□□□ 1.97
USP42Q9H9J4 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC27.38■■□□□ 1.97
USP42Q9H9J4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
USP42Q9H9J4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC27.38■■□□□ 1.97
USP42Q9H9J4 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC27.37■■□□□ 1.97
USP42Q9H9J4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
USP42Q9H9J4 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
USP42Q9H9J4 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
USP42Q9H9J4 KRT18P20-201ENST00000548986 1279 ntBASIC27.37■■□□□ 1.97
USP42Q9H9J4 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
USP42Q9H9J4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC27.37■■□□□ 1.97
USP42Q9H9J4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
USP42Q9H9J4 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
USP42Q9H9J4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
USP42Q9H9J4 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
USP42Q9H9J4 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC27.36■■□□□ 1.97
USP42Q9H9J4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC27.36■■□□□ 1.97
USP42Q9H9J4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC27.36■■□□□ 1.97
USP42Q9H9J4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USP42Q9H9J4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC27.36■■□□□ 1.97
USP42Q9H9J4 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
USP42Q9H9J4 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC27.35■■□□□ 1.97
USP42Q9H9J4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 POU5F1P3-201ENST00000428824 1078 ntBASIC27.35■■□□□ 1.97
USP42Q9H9J4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC27.35■■□□□ 1.97
USP42Q9H9J4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC27.35■■□□□ 1.97
USP42Q9H9J4 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC27.35■■□□□ 1.97
USP42Q9H9J4 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP42Q9H9J4 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP42Q9H9J4 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC27.34■■□□□ 1.97
USP42Q9H9J4 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
USP42Q9H9J4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC27.34■■□□□ 1.97
USP42Q9H9J4 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC27.34■■□□□ 1.97
USP42Q9H9J4 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP42Q9H9J4 MARS-234ENST00000630571 216 ntTSL 5 BASIC27.34■■□□□ 1.97
USP42Q9H9J4 MARS-235ENST00000630803 183 ntTSL 3 BASIC27.34■■□□□ 1.97
USP42Q9H9J4 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP42Q9H9J4 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC27.33■■□□□ 1.97
USP42Q9H9J4 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.97
USP42Q9H9J4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC27.33■■□□□ 1.97
USP42Q9H9J4 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
USP42Q9H9J4 ITM2C-210ENST00000620962 501 ntBASIC27.33■■□□□ 1.97
USP42Q9H9J4 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
USP42Q9H9J4 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
USP42Q9H9J4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP42Q9H9J4 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP42Q9H9J4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC27.32■■□□□ 1.96
USP42Q9H9J4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP42Q9H9J4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP42Q9H9J4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC27.32■■□□□ 1.96
USP42Q9H9J4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC27.32■■□□□ 1.96
USP42Q9H9J4 CYP2T1P-201ENST00000432607 1285 ntBASIC27.32■■□□□ 1.96
USP42Q9H9J4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
USP42Q9H9J4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC27.32■■□□□ 1.96
USP42Q9H9J4 AC013268.1-206ENST00000638368 961 ntBASIC27.32■■□□□ 1.96
USP42Q9H9J4 AC112229.1-201ENST00000639295 961 ntBASIC27.32■■□□□ 1.96
USP42Q9H9J4 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP42Q9H9J4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC27.31■■□□□ 1.96
USP42Q9H9J4 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC27.31■■□□□ 1.96
USP42Q9H9J4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC27.31■■□□□ 1.96
USP42Q9H9J4 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
USP42Q9H9J4 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC27.31■■□□□ 1.96
USP42Q9H9J4 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
USP42Q9H9J4 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
USP42Q9H9J4 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
USP42Q9H9J4 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC27.3■■□□□ 1.96
USP42Q9H9J4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC27.3■■□□□ 1.96
USP42Q9H9J4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
USP42Q9H9J4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
USP42Q9H9J4 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP42Q9H9J4 MIR4758-201ENST00000577688 71 ntBASIC27.3■■□□□ 1.96
USP42Q9H9J4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC27.3■■□□□ 1.96
USP42Q9H9J4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP42Q9H9J4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP42Q9H9J4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
USP42Q9H9J4 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC27.3■■□□□ 1.96
USP42Q9H9J4 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
USP42Q9H9J4 AC068338.2-201ENST00000563278 1430 ntBASIC27.29■■□□□ 1.96
USP42Q9H9J4 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
USP42Q9H9J4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
USP42Q9H9J4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC27.29■■□□□ 1.96
USP42Q9H9J4 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC27.29■■□□□ 1.96
USP42Q9H9J4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC27.29■■□□□ 1.96
USP42Q9H9J4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC27.29■■□□□ 1.96
USP42Q9H9J4 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms