Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
NKX3-1Q99801 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX3-1Q99801 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX3-1Q99801 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.61■□□□□ 0.57
NKX3-1Q99801 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NKX3-1Q99801 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
NKX3-1Q99801 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.6■□□□□ 0.57
NKX3-1Q99801 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX3-1Q99801 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX3-1Q99801 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NKX3-1Q99801 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.6■□□□□ 0.57
NKX3-1Q99801 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
NKX3-1Q99801 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX3-1Q99801 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.6■□□□□ 0.57
NKX3-1Q99801 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX3-1Q99801 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
NKX3-1Q99801 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.6■□□□□ 0.57
NKX3-1Q99801 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.6■□□□□ 0.57
NKX3-1Q99801 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX3-1Q99801 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX3-1Q99801 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NKX3-1Q99801 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
NKX3-1Q99801 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
NKX3-1Q99801 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.59■□□□□ 0.57
NKX3-1Q99801 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX3-1Q99801 FEM1AP4-201ENST00000443167 1987 ntBASIC18.59■□□□□ 0.57
NKX3-1Q99801 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NKX3-1Q99801 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NKX3-1Q99801 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
NKX3-1Q99801 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.59■□□□□ 0.57
NKX3-1Q99801 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NKX3-1Q99801 AL499627.2-201ENST00000606283 725 ntBASIC18.59■□□□□ 0.57
NKX3-1Q99801 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX3-1Q99801 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX3-1Q99801 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NKX3-1Q99801 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NKX3-1Q99801 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NKX3-1Q99801 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX3-1Q99801 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
NKX3-1Q99801 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX3-1Q99801 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NKX3-1Q99801 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NKX3-1Q99801 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.58■□□□□ 0.56
NKX3-1Q99801 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC18.58■□□□□ 0.56
NKX3-1Q99801 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.58■□□□□ 0.56
NKX3-1Q99801 AL117332.1-201ENST00000622628 974 ntBASIC18.58■□□□□ 0.56
NKX3-1Q99801 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.58■□□□□ 0.56
NKX3-1Q99801 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX3-1Q99801 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX3-1Q99801 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NKX3-1Q99801 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
NKX3-1Q99801 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.57■□□□□ 0.56
NKX3-1Q99801 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
NKX3-1Q99801 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX3-1Q99801 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
NKX3-1Q99801 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
NKX3-1Q99801 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NKX3-1Q99801 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX3-1Q99801 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX3-1Q99801 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
NKX3-1Q99801 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.57■□□□□ 0.56
NKX3-1Q99801 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
NKX3-1Q99801 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 pRNA.6-201ENST00000610482 90 ntBASIC18.56■□□□□ 0.56
NKX3-1Q99801 pRNA.5-201ENST00000612139 90 ntBASIC18.56■□□□□ 0.56
NKX3-1Q99801 pRNA.11-201ENST00000618423 90 ntBASIC18.56■□□□□ 0.56
NKX3-1Q99801 pRNA.13-201ENST00000619112 90 ntBASIC18.56■□□□□ 0.56
NKX3-1Q99801 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NKX3-1Q99801 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
NKX3-1Q99801 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 AC008406.3-201ENST00000620001 1374 ntBASIC18.55■□□□□ 0.56
NKX3-1Q99801 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 AC133637.1-201ENST00000624115 1537 ntBASIC18.55■□□□□ 0.56
NKX3-1Q99801 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NKX3-1Q99801 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms