Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 AC096631.2-201ENST00000436136 790 ntBASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 pRNA.6-201ENST00000610482 90 ntBASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 pRNA.5-201ENST00000612139 90 ntBASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 pRNA.11-201ENST00000618423 90 ntBASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 pRNA.13-201ENST00000619112 90 ntBASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RNF111Q6ZNA4 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 FEM1AP4-201ENST00000443167 1987 ntBASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 UNC93B3-201ENST00000308076 687 ntBASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RNF111Q6ZNA4 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 AC007952.6-201ENST00000573168 2673 ntBASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 AC003957.1-201ENST00000625108 2673 ntBASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 SERBP1P1-201ENST00000396021 1160 ntBASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 AL138724.1-201ENST00000606771 1088 ntBASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 AL391422.3-201ENST00000603791 2761 ntBASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RNF111Q6ZNA4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 MIR3181-201ENST00000578512 73 ntBASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.68■□□□□ 0.9
RNF111Q6ZNA4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 Z98882.1-201ENST00000622160 2253 ntBASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 AL499627.2-201ENST00000606283 725 ntBASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 AL136162.1-201ENST00000607711 1078 ntBASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RNF111Q6ZNA4 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF111Q6ZNA4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.66■□□□□ 0.9
RNF111Q6ZNA4 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF111Q6ZNA4 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RNF111Q6ZNA4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
RNF111Q6ZNA4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
RNF111Q6ZNA4 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
RNF111Q6ZNA4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms