Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
RPS28P62857 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC12.55□□□□□ -0.4
RPS28P62857 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
RPS28P62857 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RPS28P62857 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC12.55□□□□□ -0.4
RPS28P62857 AC124067.4-201ENST00000519691 2379 ntBASIC12.55□□□□□ -0.4
RPS28P62857 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC12.55□□□□□ -0.4
RPS28P62857 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC12.55□□□□□ -0.4
RPS28P62857 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
RPS28P62857 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
RPS28P62857 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RPS28P62857 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RPS28P62857 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC12.54□□□□□ -0.4
RPS28P62857 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RPS28P62857 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC12.54□□□□□ -0.4
RPS28P62857 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
RPS28P62857 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC12.54□□□□□ -0.4
RPS28P62857 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
RPS28P62857 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 AC099398.1-201ENST00000567919 2776 ntBASIC12.54□□□□□ -0.4
RPS28P62857 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
RPS28P62857 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC12.54□□□□□ -0.4
RPS28P62857 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
RPS28P62857 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
RPS28P62857 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
RPS28P62857 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
RPS28P62857 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 ME2-218ENST00000640965 2476 ntTSL 5 BASIC12.53□□□□□ -0.4
RPS28P62857 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC12.53□□□□□ -0.4
RPS28P62857 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
RPS28P62857 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC12.53□□□□□ -0.4
RPS28P62857 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
RPS28P62857 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC12.53□□□□□ -0.4
RPS28P62857 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
RPS28P62857 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
RPS28P62857 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
RPS28P62857 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
RPS28P62857 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC12.53□□□□□ -0.4
RPS28P62857 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
RPS28P62857 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
RPS28P62857 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RPS28P62857 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
RPS28P62857 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
RPS28P62857 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC12.52□□□□□ -0.4
RPS28P62857 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC12.52□□□□□ -0.4
RPS28P62857 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.4
RPS28P62857 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 AC139713.2-201ENST00000641328 2723 ntBASIC12.52□□□□□ -0.41
RPS28P62857 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
RPS28P62857 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
RPS28P62857 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
RPS28P62857 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPS28P62857 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms