Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.5■■□□□ 1.03
CCNFP41002 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCNFP41002 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.5■■□□□ 1.03
CCNFP41002 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCNFP41002 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCNFP41002 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCNFP41002 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCNFP41002 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.49■■□□□ 1.03
CCNFP41002 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.49■■□□□ 1.03
CCNFP41002 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCNFP41002 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.49■■□□□ 1.03
CCNFP41002 AL136162.1-201ENST00000607711 1078 ntBASIC21.49■■□□□ 1.03
CCNFP41002 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
CCNFP41002 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.49■■□□□ 1.03
CCNFP41002 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC21.48■■□□□ 1.03
CCNFP41002 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCNFP41002 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCNFP41002 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCNFP41002 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCNFP41002 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCNFP41002 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
CCNFP41002 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCNFP41002 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.48■■□□□ 1.03
CCNFP41002 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.48■■□□□ 1.03
CCNFP41002 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CCNFP41002 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
CCNFP41002 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.48■■□□□ 1.03
CCNFP41002 AC135279.3-201ENST00000610945 1311 ntBASIC21.48■■□□□ 1.03
CCNFP41002 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.48■■□□□ 1.03
CCNFP41002 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCNFP41002 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.47■■□□□ 1.03
CCNFP41002 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.47■■□□□ 1.03
CCNFP41002 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCNFP41002 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.47■■□□□ 1.03
CCNFP41002 OR2I1P-207ENST00000453522 948 ntBASIC21.47■■□□□ 1.03
CCNFP41002 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.47■■□□□ 1.03
CCNFP41002 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCNFP41002 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.47■■□□□ 1.03
CCNFP41002 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCNFP41002 AF106564.1-201ENST00000607058 2553 ntBASIC21.46■■□□□ 1.03
CCNFP41002 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCNFP41002 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCNFP41002 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CCNFP41002 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCNFP41002 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CCNFP41002 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCNFP41002 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CCNFP41002 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
CCNFP41002 AC024257.2-201ENST00000549699 147 ntBASIC21.46■■□□□ 1.03
CCNFP41002 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CCNFP41002 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCNFP41002 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.46■■□□□ 1.03
CCNFP41002 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCNFP41002 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCNFP41002 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.03
CCNFP41002 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
CCNFP41002 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CCNFP41002 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCNFP41002 AC026471.6-201ENST00000622954 1905 ntBASIC21.45■■□□□ 1.02
CCNFP41002 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCNFP41002 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CCNFP41002 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCNFP41002 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CCNFP41002 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.45■■□□□ 1.02
CCNFP41002 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.45■■□□□ 1.02
CCNFP41002 AC079089.2-201ENST00000531211 1277 ntBASIC21.45■■□□□ 1.02
CCNFP41002 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.45■■□□□ 1.02
CCNFP41002 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CCNFP41002 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCNFP41002 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.45■■□□□ 1.02
CCNFP41002 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCNFP41002 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCNFP41002 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
CCNFP41002 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCNFP41002 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCNFP41002 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
CCNFP41002 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
CCNFP41002 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.44■■□□□ 1.02
CCNFP41002 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 PBX2P1-201ENST00000493219 1291 ntBASIC21.44■■□□□ 1.02
CCNFP41002 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.44■■□□□ 1.02
CCNFP41002 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.44■■□□□ 1.02
CCNFP41002 AC106739.1-201ENST00000617035 715 ntBASIC21.44■■□□□ 1.02
CCNFP41002 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCNFP41002 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCNFP41002 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCNFP41002 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms