Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CKS2P33552 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CKS2P33552 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CKS2P33552 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CKS2P33552 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CKS2P33552 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CKS2P33552 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CKS2P33552 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CKS2P33552 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 AC009086.3-201ENST00000623486 1008 ntBASIC15.7■□□□□ 0.1
CKS2P33552 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC15.7■□□□□ 0.1
CKS2P33552 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CKS2P33552 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CKS2P33552 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CKS2P33552 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC15.69■□□□□ 0.1
CKS2P33552 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC15.69■□□□□ 0.1
CKS2P33552 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC15.69■□□□□ 0.1
CKS2P33552 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CKS2P33552 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC15.69■□□□□ 0.1
CKS2P33552 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CKS2P33552 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CKS2P33552 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC15.68■□□□□ 0.1
CKS2P33552 FP325331.1-202ENST00000623531 1380 ntBASIC15.68■□□□□ 0.1
CKS2P33552 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 DUX4L9-201ENST00000449051 1259 ntBASIC15.68■□□□□ 0.1
CKS2P33552 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC15.68■□□□□ 0.1
CKS2P33552 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CKS2P33552 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.68■□□□□ 0.1
CKS2P33552 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC15.68■□□□□ 0.1
CKS2P33552 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CKS2P33552 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CKS2P33552 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
CKS2P33552 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.67■□□□□ 0.1
CKS2P33552 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC15.67■□□□□ 0.1
CKS2P33552 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
CKS2P33552 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 LSM7-203ENST00000585409 512 ntTSL 2 BASIC15.67■□□□□ 0.1
CKS2P33552 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC15.67■□□□□ 0.1
CKS2P33552 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC15.67■□□□□ 0.1
CKS2P33552 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CKS2P33552 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC15.67■□□□□ 0.1
CKS2P33552 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CKS2P33552 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
CKS2P33552 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CKS2P33552 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC15.66■□□□□ 0.1
CKS2P33552 HYI-210ENST00000486909 905 ntTSL 5 BASIC15.66■□□□□ 0.1
CKS2P33552 CA15P2-201ENST00000611168 834 ntBASIC15.66■□□□□ 0.1
CKS2P33552 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CKS2P33552 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC15.66■□□□□ 0.1
CKS2P33552 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms