Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H2Q9HBD1 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC23.1■■□□□ 1.29
RC3H2Q9HBD1 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 FAM201B-201ENST00000458407 597 ntBASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H2Q9HBD1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 MIPEPP3-201ENST00000412105 444 ntBASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 AC008687.6-201ENST00000596318 630 ntBASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 LINC00526-201ENST00000581067 1875 ntBASIC23.08■■□□□ 1.29
RC3H2Q9HBD1 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
RC3H2Q9HBD1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 MIR4758-201ENST00000577688 71 ntBASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 AC053503.5-201ENST00000601508 636 ntBASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
RC3H2Q9HBD1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 POU5F1P3-201ENST00000428824 1078 ntBASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 AP006587.3-201ENST00000525742 1516 ntBASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
RC3H2Q9HBD1 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.05■■□□□ 1.28
RC3H2Q9HBD1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RC3H2Q9HBD1 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RC3H2Q9HBD1 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.05■■□□□ 1.28
RC3H2Q9HBD1 AL034346.1-201ENST00000568244 1277 ntBASIC23.05■■□□□ 1.28
RC3H2Q9HBD1 ITM2C-210ENST00000620962 501 ntBASIC23.05■■□□□ 1.28
RC3H2Q9HBD1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 OR10C1-204ENST00000622521 1039 ntBASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 OR7E47P-201ENST00000546390 1422 ntBASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RC3H2Q9HBD1 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H2Q9HBD1 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
RC3H2Q9HBD1 MKRN4P-201ENST00000444706 1521 ntBASIC23.03■■□□□ 1.28
RC3H2Q9HBD1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H2Q9HBD1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H2Q9HBD1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms