Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 METAP1-211ENST00000514051 1058 ntTSL 1 (best)10.72□□□□□ -0.691e-6■■■□□ 16.9
DDX55Q8NHQ9 SEC16A-204ENST00000313084 3073 ntAPPRIS ALT2 TSL 2 BASIC10.56□□□□□ -0.721e-6■■■□□ 16.9
DDX55Q8NHQ9 UQCRH-202ENST00000460947 621 ntTSL 210.44□□□□□ -0.741e-6■■■□□ 16.9
DDX55Q8NHQ9 NUMA1-201ENST00000351960 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.32□□□□□ -0.763e-7■■■□□ 16.9
DDX55Q8NHQ9 SMAP2-201ENST00000372708 2473 ntTSL 1 (best)10.24□□□□□ -0.772e-23■■■□□ 16.9
DDX55Q8NHQ9 METTL17-209ENST00000554588 1077 ntTSL 210.17□□□□□ -0.781e-6■■■□□ 16.9
DDX55Q8NHQ9 STAT2-210ENST00000557235 3073 ntAPPRIS ALT2 TSL 2 BASIC10.13□□□□□ -0.791e-6■■■□□ 16.9
DDX55Q8NHQ9 SMAP2-206ENST00000614549 2570 ntTSL 1 (best) BASIC10.1□□□□□ -0.792e-23■■■□□ 16.9
DDX55Q8NHQ9 STAT6-201ENST00000300134 4034 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.89e-9■■■□□ 16.9
DDX55Q8NHQ9 METTL17-213ENST00000554985 596 ntTSL 210.02□□□□□ -0.811e-6■■■□□ 16.9
DDX55Q8NHQ9 METTL17-220ENST00000556442 582 ntTSL 210.02□□□□□ -0.811e-6■■■□□ 16.9
DDX55Q8NHQ9 METTL17-214ENST00000555177 572 ntTSL 210.02□□□□□ -0.811e-6■■■□□ 16.9
DDX55Q8NHQ9 METTL17-207ENST00000554283 568 ntTSL 410.02□□□□□ -0.811e-6■■■□□ 16.9
DDX55Q8NHQ9 SEC16A-201ENST00000277537 3910 ntAPPRIS ALT2 TSL 1 (best)9.66□□□□□ -0.861e-6■■■□□ 16.9
DDX55Q8NHQ9 METTL17-212ENST00000554949 576 ntTSL 39.32□□□□□ -0.921e-6■■■□□ 16.9
DDX55Q8NHQ9 METTL17-218ENST00000555670 803 ntTSL 59.32□□□□□ -0.921e-6■■■□□ 16.9
DDX55Q8NHQ9 HGD-201ENST00000283871 2005 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.951e-6■■■□□ 16.9
DDX55Q8NHQ9 NUMA1-232ENST00000613205 3940 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.973e-7■■■□□ 16.9
DDX55Q8NHQ9 METTL17-206ENST00000553564 900 ntTSL 58.9□□□□□ -0.981e-6■■■□□ 16.9
DDX55Q8NHQ9 DHRS11-216ENST00000621871 883 ntTSL 38.43□□□□□ -1.061e-9■■■□□ 16.9
DDX55Q8NHQ9 UQCRH-205ENST00000496387 674 ntTSL 1 (best)6.97□□□□□ -1.291e-6■■■□□ 16.9
DDX55Q8NHQ9 UQCRH-204ENST00000489056 553 ntTSL 24.42□□□□□ -1.71e-6■■■□□ 16.9
DDX55Q8NHQ9 MAP3K1-202ENST00000469188 3713 ntTSL 1 (best)2.39□□□□□ -2.031e-6■■■□□ 16.9
DDX55Q8NHQ9 RNA5SP481-201ENST00000516814 122 ntBASIC2.15□□□□□ -2.071e-6■■■□□ 16.9
DDX55Q8NHQ9 COX5B-203ENST00000491989 611 ntTSL 311.91□□□□□ -0.52e-20■■■□□ 16.9
DDX55Q8NHQ9 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.542e-6■■■□□ 16.9
DDX55Q8NHQ9 TMEM101-205ENST00000589334 1830 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.022e-6■■■□□ 16.9
DDX55Q8NHQ9 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.03□□□□□ -1.281e-6■■■□□ 16.8
DDX55Q8NHQ9 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.491e-6■■■□□ 16.8
DDX55Q8NHQ9 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.611e-19■■■□□ 16.8
DDX55Q8NHQ9 ILF3-219ENST00000590261 3219 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.21e-19■■■□□ 16.8
DDX55Q8NHQ9 ILF3-208ENST00000587928 4230 ntTSL 211.58□□□□□ -0.561e-19■■■□□ 16.8
DDX55Q8NHQ9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC28.84■■■□□ 2.213e-18■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-205ENST00000573842 495 ntTSL 226.23■■□□□ 1.793e-9■■■□□ 16.8
DDX55Q8NHQ9 CHD9-208ENST00000563410 488 ntTSL 226.21■■□□□ 1.793e-9■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC25.94■■□□□ 1.743e-9■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-209ENST00000576921 1199 ntTSL 1 (best)25.94■■□□□ 1.743e-9■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC25.94■■□□□ 1.743e-9■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-208ENST00000575214 1365 ntTSL 225.17■■□□□ 1.623e-9■■■□□ 16.8
DDX55Q8NHQ9 MXD3-204ENST00000502529 440 ntTSL 324.83■■□□□ 1.573e-9■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC24.73■■□□□ 1.553e-9■■■□□ 16.8
DDX55Q8NHQ9 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.53e-18■■■□□ 16.8
DDX55Q8NHQ9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC24.41■■□□□ 1.53e-18■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-204ENST00000573095 828 ntTSL 324.12■■□□□ 1.453e-9■■■□□ 16.8
DDX55Q8NHQ9 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.08■■□□□ 1.293e-9■■■□□ 16.8
DDX55Q8NHQ9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC22.55■■□□□ 1.24e-6■■■□□ 16.8
DDX55Q8NHQ9 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.154e-6■■■□□ 16.8
DDX55Q8NHQ9 FAM98C-206ENST00000588348 2530 ntTSL 222.09■■□□□ 1.133e-18■■■□□ 16.8
DDX55Q8NHQ9 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.14e-6■■■□□ 16.8
DDX55Q8NHQ9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.083e-9■■■□□ 16.8
DDX55Q8NHQ9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 13e-9■■■□□ 16.8
DDX55Q8NHQ9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 13e-9■■■□□ 16.8
DDX55Q8NHQ9 MXD3-209ENST00000513169 555 ntTSL 520.62■□□□□ 0.893e-9■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC20.26■□□□□ 0.833e-9■■■□□ 16.8
DDX55Q8NHQ9 SMG5-204ENST00000476954 1161 ntTSL 219.86■□□□□ 0.773e-9■■■□□ 16.8
DDX55Q8NHQ9 FAM98C-207ENST00000589027 670 ntTSL 219.07■□□□□ 0.643e-18■■■□□ 16.8
DDX55Q8NHQ9 STXBP2-211ENST00000597068 1785 ntTSL 1 (best)18.3■□□□□ 0.524e-6■■■□□ 16.8
DDX55Q8NHQ9 NR1H2-203ENST00000593532 2380 ntTSL 218.26■□□□□ 0.513e-9■■■□□ 16.8
DDX55Q8NHQ9 STXBP2-217ENST00000599737 1523 ntTSL 517.52■□□□□ 0.394e-6■■■□□ 16.8
DDX55Q8NHQ9 STXBP2-219ENST00000600702 770 ntTSL 216.29■□□□□ 0.24e-6■■■□□ 16.8
DDX55Q8NHQ9 FAM98C-204ENST00000586372 4133 ntTSL 216.04■□□□□ 0.163e-18■■■□□ 16.8
DDX55Q8NHQ9 HCFC1R1-206ENST00000574151 618 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.43e-9■■■□□ 16.8
DDX55Q8NHQ9 COPA-202ENST00000368069 4664 ntTSL 1 (best) BASIC12.5□□□□□ -0.413e-9■■■□□ 16.8
DDX55Q8NHQ9 COPA-201ENST00000241704 4789 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.533e-9■■■□□ 16.8
DDX55Q8NHQ9 CHD9-217ENST00000565832 2169 ntTSL 1 (best)7□□□□□ -1.293e-9■■■□□ 16.8
DDX55Q8NHQ9 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.08□□□□□ -1.63e-9■■■□□ 16.8
DDX55Q8NHQ9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.833e-9■■■□□ 16.8
DDX55Q8NHQ9 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.35□□□□□ -1.873e-9■■■□□ 16.8
DDX55Q8NHQ9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.913e-9■■■□□ 16.8
DDX55Q8NHQ9 PPFIA3-209ENST00000602783 980 ntTSL 1 (best)26.41■■□□□ 1.823e-7■■■□□ 16.8
DDX55Q8NHQ9 PPFIA3-212ENST00000602897 1615 ntTSL 225.66■■□□□ 1.73e-7■■■□□ 16.8
DDX55Q8NHQ9 PPFIA3-211ENST00000602848 1638 ntTSL 1 (best)25.21■■□□□ 1.633e-7■■■□□ 16.8
DDX55Q8NHQ9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.483e-7■■■□□ 16.8
DDX55Q8NHQ9 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.9■□□□□ 0.143e-7■■■□□ 16.8
DDX55Q8NHQ9 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.358e-7■■■□□ 16.8
DDX55Q8NHQ9 TPRN-201ENST00000333046 2109 ntAPPRIS ALT2 TSL 218.92■□□□□ 0.628e-7■■■□□ 16.8
DDX55Q8NHQ9 TPRN-203ENST00000477345 3350 ntTSL 1 (best)13.6□□□□□ -0.238e-7■■■□□ 16.8
DDX55Q8NHQ9 HMGCR-201ENST00000287936 4585 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.741e-11■■■□□ 16.8
DDX55Q8NHQ9 SNU13-203ENST00000401959 1670 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.072e-6■■■□□ 16.8
DDX55Q8NHQ9 SNU13-201ENST00000215956 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.072e-6■■■□□ 16.8
DDX55Q8NHQ9 SNU13-202ENST00000355257 1503 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.362e-6■■■□□ 16.8
DDX55Q8NHQ9 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.4■□□□□ 0.861e-9■■■□□ 16.8
DDX55Q8NHQ9 HLA-A-205ENST00000461903 1352 nt26.55■■□□□ 1.842e-15■■■□□ 16.8
DDX55Q8NHQ9 HLA-A-209ENST00000638375 975 ntBASIC23.12■■□□□ 1.292e-15■■■□□ 16.8
DDX55Q8NHQ9 HLA-A-206ENST00000479320 1334 nt21.93■■□□□ 1.12e-15■■■□□ 16.8
DDX55Q8NHQ9 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.721e-14■■■□□ 16.7
DDX55Q8NHQ9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC24.18■■□□□ 1.461e-14■■■□□ 16.7
DDX55Q8NHQ9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC22.48■■□□□ 1.191e-14■■■□□ 16.7
DDX55Q8NHQ9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.121e-14■■■□□ 16.7
DDX55Q8NHQ9 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.921e-14■■■□□ 16.7
DDX55Q8NHQ9 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.871e-14■■■□□ 16.7
DDX55Q8NHQ9 GMPPA-207ENST00000443704 1783 ntTSL 519.49■□□□□ 0.711e-14■■■□□ 16.7
DDX55Q8NHQ9 GMPPA-211ENST00000481170 4942 ntTSL 213.89□□□□□ -0.191e-14■■■□□ 16.7
DDX55Q8NHQ9 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.34e-7■■■□□ 16.7
DDX55Q8NHQ9 ERMP1-203ENST00000462592 3554 ntTSL 217.18■□□□□ 0.344e-7■■■□□ 16.7
DDX55Q8NHQ9 ERMP1-201ENST00000214893 4974 ntTSL 1 (best)10.85□□□□□ -0.674e-7■■■□□ 16.7
DDX55Q8NHQ9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.362e-7■■■□□ 16.7
DDX55Q8NHQ9 ATF5-203ENST00000596658 722 ntTSL 221.92■■□□□ 1.12e-7■■■□□ 16.7
DDX55Q8NHQ9 ATF5-204ENST00000597227 828 ntTSL 320.56■□□□□ 0.882e-7■■■□□ 16.7
DDX55Q8NHQ9 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.57■□□□□ 0.562e-7■■■□□ 16.7
Retrieved 100 of 15,504 protein–RNA pairs in 241 ms