RNA–Protein interactions for RNA: ENST00000447540.5

CHD9-203, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5 BASIC

Gene CHD9, Length 11,509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-203ENST00000447540 MYT1Q01538 1121 aa5.37□□□□□ -1.55
CHD9-203ENST00000447540 PELP1Q8IZL8 1130 aaKnown RBP5.32□□□□□ -1.56
CHD9-203ENST00000447540 TTBK1Q5TCY1 1321 aaPredicted RBP5.15□□□□□ -1.58
CHD9-203ENST00000447540 ERICH6Q7L0X2 663 aa4.79□□□□□ -1.64
CHD9-203ENST00000447540 ZEB1P37275 1124 aaPredicted RBP4.66□□□□□ -1.66
CHD9-203ENST00000447540 CENPBP07199 599 aaPredicted RBP4.6□□□□□ -1.67
CHD9-203ENST00000447540 HRCP23327 699 aa4.58□□□□□ -1.68
CHD9-203ENST00000447540 CLSPNQ9HAW4 1339 aa4.53□□□□□ -1.68
CHD9-203ENST00000447540 MYT1LQ9UL68 1186 aa4.53□□□□□ -1.68
CHD9-203ENST00000447540 YTHDC1Q96MU7 727 aaKnown RBP4.47□□□□□ -1.69
CHD9-203ENST00000447540 CCER1Q8TC90 406 aaPredicted RBP4.47□□□□□ -1.69
CHD9-203ENST00000447540 SLC24A1O60721 1099 aa4.46□□□□□ -1.7
CHD9-203ENST00000447540 CCDC180Q9P1Z9 1646 aa4.45□□□□□ -1.7
CHD9-203ENST00000447540 BAZ1BQ9UIG0 1483 aaKnown RBP4.42□□□□□ -1.7
CHD9-203ENST00000447540 MYO15BQ96JP2 1530 aa4.4□□□□□ -1.7
CHD9-203ENST00000447540 NISCHQ9Y2I1 1504 aa4.39□□□□□ -1.71
CHD9-203ENST00000447540 DAXXQ9UER7 740 aaPredicted RBP4.36□□□□□ -1.71
CHD9-203ENST00000447540 APLP2Q06481 763 aa4.35□□□□□ -1.71
CHD9-203ENST00000447540 SHROOM4Q9ULL8 1493 aa4.35□□□□□ -1.71
CHD9-203ENST00000447540 RANGAP1P46060 587 aaPredicted RBP4.34□□□□□ -1.72
CHD9-203ENST00000447540 GLIPR1L2Q4G1C9 344 aa4.33□□□□□ -1.72
CHD9-203ENST00000447540 ACIN1Q9UKV3 1341 aaKnown RBP4.33□□□□□ -1.72
CHD9-203ENST00000447540 TRIM26Q12899 539 aaPredicted RBP4.31□□□□□ -1.72
CHD9-203ENST00000447540 PCGF6Q9BYE7 350 aa4.3□□□□□ -1.72
CHD9-203ENST00000447540 ERICH6BQ5W0A0 696 aa4.3□□□□□ -1.72
CHD9-203ENST00000447540 BCL11AQ9H165 835 aa4.28□□□□□ -1.72
CHD9-203ENST00000447540 DCAF1Q9Y4B6 1507 aa4.28□□□□□ -1.72
CHD9-203ENST00000447540 ANP32EQ9BTT0 268 aa4.27□□□□□ -1.73
CHD9-203ENST00000447540 EHMT2Q96KQ7 1210 aa4.25□□□□□ -1.73
CHD9-203ENST00000447540 EIF5BO60841 1220 aaKnown RBP4.24□□□□□ -1.73
CHD9-203ENST00000447540 PRKCSHP14314 528 aaPredicted RBP4.23□□□□□ -1.73
CHD9-203ENST00000447540 SCAF1Q9H7N4 1312 aaKnown RBP4.23□□□□□ -1.73
CHD9-203ENST00000447540 NEFLP07196 543 aa4.23□□□□□ -1.73
CHD9-203ENST00000447540 GTF3C3Q9Y5Q9 886 aa4.21□□□□□ -1.73
CHD9-203ENST00000447540 RTL5Q5HYW3 569 aaPredicted RBP4.19□□□□□ -1.74
CHD9-203ENST00000447540 NCLP19338 710 aaKnown RBP4.17□□□□□ -1.74
CHD9-203ENST00000447540 DIEXFQ68CQ4 756 aaKnown RBP4.17□□□□□ -1.74
CHD9-203ENST00000447540 ZNF326Q5BKZ1 582 aaKnown RBP4.16□□□□□ -1.74
CHD9-203ENST00000447540 FAM9AQ8IZU1 332 aaPredicted RBP4.12□□□□□ -1.75
CHD9-203ENST00000447540 NEUROD1Q13562 356 aa4.11□□□□□ -1.75
CHD9-203ENST00000447540 UBE2Q2Q8WVN8 375 aa4.1□□□□□ -1.75
CHD9-203ENST00000447540 ARID4BQ4LE39 1312 aaPredicted RBP4.1□□□□□ -1.75
CHD9-203ENST00000447540 DCAF8L2P0C7V8 631 aa4.09□□□□□ -1.76
CHD9-203ENST00000447540 ARXQ96QS3 562 aa4.08□□□□□ -1.76
CHD9-203ENST00000447540 ZNF316A6NFI3 1004 aaPredicted RBP4.08□□□□□ -1.76
CHD9-203ENST00000447540 PPARGC1BQ86YN6 1023 aaKnown RBP4.08□□□□□ -1.76
CHD9-203ENST00000447540 CDK11AQ9UQ88 783 aaPredicted RBP4.08□□□□□ -1.76
CHD9-203ENST00000447540 USP35Q9P2H5 1018 aa4.07□□□□□ -1.76
CHD9-203ENST00000447540 RSPH6AQ9H0K4 717 aa4.06□□□□□ -1.76
CHD9-203ENST00000447540 CHIC1Q5VXU3 224 aa4.05□□□□□ -1.76
CHD9-203ENST00000447540 ANP32AP39687 249 aaKnown RBP4.04□□□□□ -1.76
CHD9-203ENST00000447540 SUPT5HO00267 1087 aaKnown RBP4.04□□□□□ -1.76
CHD9-203ENST00000447540 FANCIQ9NVI1 1328 aa4.04□□□□□ -1.76
CHD9-203ENST00000447540 TNNT2P45379 298 aaPredicted RBP4.02□□□□□ -1.77
CHD9-203ENST00000447540 HMGB1P09429 215 aaKnown RBP4.02□□□□□ -1.77
CHD9-203ENST00000447540 PKNOX2Q96KN3 472 aa4.02□□□□□ -1.77
CHD9-203ENST00000447540 PPM1GO15355 546 aaPredicted RBP4.01□□□□□ -1.77
CHD9-203ENST00000447540 PTMSP20962 102 aa4.01□□□□□ -1.77
CHD9-203ENST00000447540 TRIM44Q96DX7 344 aaPredicted RBP4.01□□□□□ -1.77
CHD9-203ENST00000447540 NCBP3Q53F19 620 aaKnown RBP4.01□□□□□ -1.77
CHD9-203ENST00000447540 NACADO15069 1562 aa4.01□□□□□ -1.77
CHD9-203ENST00000447540 PODXL2Q9NZ53 605 aa4□□□□□ -1.77
CHD9-203ENST00000447540 CSRNP3Q8WYN3 585 aa4□□□□□ -1.77
CHD9-203ENST00000447540 ANP32BQ92688 251 aaKnown RBP3.98□□□□□ -1.77
CHD9-203ENST00000447540 MAP7D2Q96T17 732 aa3.97□□□□□ -1.77
CHD9-203ENST00000447540 TRIM41Q8WV44 630 aa3.97□□□□□ -1.77
CHD9-203ENST00000447540 HOMEZQ8IX15 550 aa3.96□□□□□ -1.78
CHD9-203ENST00000447540 DEKP35659 375 aaKnown RBP3.96□□□□□ -1.78
CHD9-203ENST00000447540 LAS1LQ9Y4W2 734 aaKnown RBP3.96□□□□□ -1.78
CHD9-203ENST00000447540 MTERF4Q7Z6M4 381 aaKnown RBP3.96□□□□□ -1.78
CHD9-203ENST00000447540 TSHZ2Q9NRE2 1034 aa3.96□□□□□ -1.78
CHD9-203ENST00000447540 ZBTB47Q9UFB7 747 aaPredicted RBP3.95□□□□□ -1.78
CHD9-203ENST00000447540 POLR3GLQ9BT43 218 aa3.95□□□□□ -1.78
CHD9-203ENST00000447540 RRP9O43818 475 aaKnown RBP3.95□□□□□ -1.78
CHD9-203ENST00000447540 SUPT16HQ9Y5B9 1047 aaKnown RBP3.94□□□□□ -1.78
CHD9-203ENST00000447540 DDRGK1Q96HY6 314 aa3.94□□□□□ -1.78
CHD9-203ENST00000447540 RBM19Q9Y4C8 960 aaKnown RBP3.94□□□□□ -1.78
CHD9-203ENST00000447540 NOP58Q9Y2X3 529 aaKnown RBP3.93□□□□□ -1.78
CHD9-203ENST00000447540 TAF7LQ5H9L4 462 aa3.92□□□□□ -1.78
CHD9-203ENST00000447540 L1TD1Q5T7N2 865 aaKnown RBP3.92□□□□□ -1.78
CHD9-203ENST00000447540 CNGB1Q14028 1251 aaPredicted RBP3.92□□□□□ -1.78
CHD9-203ENST00000447540 ARID3AQ99856 593 aa3.92□□□□□ -1.78
CHD9-203ENST00000447540 CCDC136Q96JN2 1154 aa3.92□□□□□ -1.78
CHD9-203ENST00000447540 C11orf95C9JLR9 678 aaPredicted RBP3.91□□□□□ -1.78
CHD9-203ENST00000447540 NEFMP07197 916 aa3.91□□□□□ -1.78
CHD9-203ENST00000447540 TAF3Q5VWG9 929 aa3.91□□□□□ -1.78
CHD9-203ENST00000447540 ISY1Q9ULR0 285 aaKnown RBP3.91□□□□□ -1.78
CHD9-203ENST00000447540 HSP90AA1P07900 732 aaKnown RBP3.91□□□□□ -1.78
CHD9-203ENST00000447540 HSP90AA2PQ14568 343 aaPredicted RBP3.91□□□□□ -1.78
CHD9-203ENST00000447540 TIMELESSQ9UNS1 1208 aa3.9□□□□□ -1.79
CHD9-203ENST00000447540 CCER2I3L3R5 266 aa3.9□□□□□ -1.79
CHD9-203ENST00000447540 CDK11BP21127 795 aaKnown RBP3.9□□□□□ -1.79
CHD9-203ENST00000447540 PDE4CQ08493 712 aa3.9□□□□□ -1.79
CHD9-203ENST00000447540 PDIA4P13667 645 aaKnown RBP3.89□□□□□ -1.79
CHD9-203ENST00000447540 PNNQ9H307 717 aaKnown RBP3.89□□□□□ -1.79
CHD9-203ENST00000447540 FAM43AQ8N2R8 423 aa3.88□□□□□ -1.79
CHD9-203ENST00000447540 PPP4R2Q9NY27 417 aa3.88□□□□□ -1.79
CHD9-203ENST00000447540 FBXO3Q9UK99 471 aa3.88□□□□□ -1.79
CHD9-203ENST00000447540 WDR97A6NE52 1622 aa3.88□□□□□ -1.79
CHD9-203ENST00000447540 ANP32CO43423 234 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms