Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PKNOX1P55347 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PKNOX1P55347 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21■□□□□ 0.95
PKNOX1P55347 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PKNOX1P55347 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21■□□□□ 0.95
PKNOX1P55347 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PKNOX1P55347 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PKNOX1P55347 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PKNOX1P55347 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.99■□□□□ 0.95
PKNOX1P55347 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PKNOX1P55347 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
PKNOX1P55347 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PKNOX1P55347 AC244015.2-201ENST00000616358 1861 ntBASIC20.99■□□□□ 0.95
PKNOX1P55347 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PKNOX1P55347 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PKNOX1P55347 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.99■□□□□ 0.95
PKNOX1P55347 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.99■□□□□ 0.95
PKNOX1P55347 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PKNOX1P55347 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PKNOX1P55347 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PKNOX1P55347 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PKNOX1P55347 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKNOX1P55347 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.98■□□□□ 0.95
PKNOX1P55347 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PKNOX1P55347 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKNOX1P55347 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.98■□□□□ 0.95
PKNOX1P55347 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
PKNOX1P55347 SRD5A1P1-201ENST00000442297 786 ntBASIC20.98■□□□□ 0.95
PKNOX1P55347 OR2I1P-207ENST00000453522 948 ntBASIC20.98■□□□□ 0.95
PKNOX1P55347 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PKNOX1P55347 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.98■□□□□ 0.95
PKNOX1P55347 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKNOX1P55347 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PKNOX1P55347 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKNOX1P55347 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.98■□□□□ 0.95
PKNOX1P55347 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKNOX1P55347 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PKNOX1P55347 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.98■□□□□ 0.95
PKNOX1P55347 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKNOX1P55347 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PKNOX1P55347 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKNOX1P55347 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PKNOX1P55347 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.97■□□□□ 0.95
PKNOX1P55347 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
PKNOX1P55347 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.97■□□□□ 0.95
PKNOX1P55347 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKNOX1P55347 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKNOX1P55347 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKNOX1P55347 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
PKNOX1P55347 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PKNOX1P55347 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
PKNOX1P55347 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PKNOX1P55347 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PKNOX1P55347 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.96■□□□□ 0.95
PKNOX1P55347 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.96■□□□□ 0.95
PKNOX1P55347 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
PKNOX1P55347 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.96■□□□□ 0.95
PKNOX1P55347 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.96■□□□□ 0.95
PKNOX1P55347 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
PKNOX1P55347 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PKNOX1P55347 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.95
PKNOX1P55347 OR7E47P-201ENST00000546390 1422 ntBASIC20.95■□□□□ 0.95
PKNOX1P55347 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKNOX1P55347 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKNOX1P55347 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKNOX1P55347 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.95■□□□□ 0.94
PKNOX1P55347 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PKNOX1P55347 AL512631.2-201ENST00000604634 923 ntBASIC20.95■□□□□ 0.94
PKNOX1P55347 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.95■□□□□ 0.94
PKNOX1P55347 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKNOX1P55347 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKNOX1P55347 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PKNOX1P55347 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKNOX1P55347 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PKNOX1P55347 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.95■□□□□ 0.94
PKNOX1P55347 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PKNOX1P55347 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PKNOX1P55347 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.94■□□□□ 0.94
PKNOX1P55347 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PKNOX1P55347 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.94■□□□□ 0.94
PKNOX1P55347 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.94■□□□□ 0.94
PKNOX1P55347 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.94■□□□□ 0.94
PKNOX1P55347 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.94■□□□□ 0.94
PKNOX1P55347 AC087239.1-201ENST00000622671 572 ntBASIC20.94■□□□□ 0.94
PKNOX1P55347 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms