Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CD40P25942 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CD40P25942 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CD40P25942 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CD40P25942 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.54■□□□□ 0.56
CD40P25942 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CD40P25942 AC090192.1-201ENST00000517740 490 ntBASIC18.54■□□□□ 0.56
CD40P25942 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.54■□□□□ 0.56
CD40P25942 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.54■□□□□ 0.56
CD40P25942 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.54■□□□□ 0.56
CD40P25942 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CD40P25942 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CD40P25942 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CD40P25942 ESRRAP2-201ENST00000418437 1549 ntBASIC18.54■□□□□ 0.56
CD40P25942 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CD40P25942 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.54■□□□□ 0.56
CD40P25942 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
CD40P25942 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.53■□□□□ 0.56
CD40P25942 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.53■□□□□ 0.56
CD40P25942 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.53■□□□□ 0.56
CD40P25942 AC104187.1-201ENST00000607510 612 ntBASIC18.53■□□□□ 0.56
CD40P25942 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CD40P25942 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CD40P25942 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.52■□□□□ 0.56
CD40P25942 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CD40P25942 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CD40P25942 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CD40P25942 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.52■□□□□ 0.56
CD40P25942 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.52■□□□□ 0.56
CD40P25942 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CD40P25942 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CD40P25942 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.52■□□□□ 0.56
CD40P25942 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.52■□□□□ 0.56
CD40P25942 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.52■□□□□ 0.56
CD40P25942 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CD40P25942 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CD40P25942 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.52■□□□□ 0.55
CD40P25942 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CD40P25942 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CD40P25942 C9orf163-202ENST00000624034 2573 ntBASIC18.51■□□□□ 0.55
CD40P25942 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.51■□□□□ 0.55
CD40P25942 C1orf229-201ENST00000623686 2258 ntBASIC18.51■□□□□ 0.55
CD40P25942 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CD40P25942 AP006587.3-201ENST00000525742 1516 ntBASIC18.51■□□□□ 0.55
CD40P25942 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.51■□□□□ 0.55
CD40P25942 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CD40P25942 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CD40P25942 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CD40P25942 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.51■□□□□ 0.55
CD40P25942 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CD40P25942 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CD40P25942 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
CD40P25942 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CD40P25942 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.5■□□□□ 0.55
CD40P25942 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.5■□□□□ 0.55
CD40P25942 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
CD40P25942 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 KRT18P11-201ENST00000435214 1283 ntBASIC18.5■□□□□ 0.55
CD40P25942 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.5■□□□□ 0.55
CD40P25942 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CD40P25942 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.5■□□□□ 0.55
CD40P25942 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.49■□□□□ 0.55
CD40P25942 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CD40P25942 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CD40P25942 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.49■□□□□ 0.55
CD40P25942 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CD40P25942 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CD40P25942 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC18.49■□□□□ 0.55
CD40P25942 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CD40P25942 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CD40P25942 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CD40P25942 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CD40P25942 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.49■□□□□ 0.55
CD40P25942 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.49■□□□□ 0.55
CD40P25942 AC080038.1-201ENST00000611274 1154 ntBASIC18.49■□□□□ 0.55
CD40P25942 BID-214ENST00000617586 542 ntTSL 5 BASIC18.49■□□□□ 0.55
CD40P25942 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.49■□□□□ 0.55
CD40P25942 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CD40P25942 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
CD40P25942 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CD40P25942 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CD40P25942 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms