Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 MKRN4P-201ENST00000444706 1521 ntBASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 MIPEPP3-201ENST00000412105 444 ntBASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CSB-PGBD3P0DP91 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CSB-PGBD3P0DP91 KRT18P29-201ENST00000397031 1267 ntBASIC28.65■■■□□ 2.18
CSB-PGBD3P0DP91 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC28.65■■■□□ 2.18
CSB-PGBD3P0DP91 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC28.65■■■□□ 2.18
CSB-PGBD3P0DP91 AC068338.2-201ENST00000563278 1430 ntBASIC28.65■■■□□ 2.18
CSB-PGBD3P0DP91 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CSB-PGBD3P0DP91 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC28.65■■■□□ 2.18
CSB-PGBD3P0DP91 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC28.65■■■□□ 2.18
CSB-PGBD3P0DP91 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CSB-PGBD3P0DP91 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
CSB-PGBD3P0DP91 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.17
CSB-PGBD3P0DP91 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 NAA20-201ENST00000310450 920 ntTSL 2 BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 BET1L-204ENST00000410108 637 ntTSL 3 BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 ITM2C-210ENST00000620962 501 ntBASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC28.63■■■□□ 2.17
CSB-PGBD3P0DP91 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 PPP1R14BP2-201ENST00000426284 444 ntBASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 ANOS2P-203ENST00000472227 1816 ntBASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CSB-PGBD3P0DP91 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 MARS-234ENST00000630571 216 ntTSL 5 BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 MARS-235ENST00000630803 183 ntTSL 3 BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CSB-PGBD3P0DP91 OR7E47P-201ENST00000546390 1422 ntBASIC28.6■■■□□ 2.17
CSB-PGBD3P0DP91 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
CSB-PGBD3P0DP91 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CSB-PGBD3P0DP91 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
CSB-PGBD3P0DP91 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
CSB-PGBD3P0DP91 SLC7A5P1-201ENST00000568957 537 ntBASIC28.6■■■□□ 2.17
CSB-PGBD3P0DP91 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
CSB-PGBD3P0DP91 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CSB-PGBD3P0DP91 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CSB-PGBD3P0DP91 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CSB-PGBD3P0DP91 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC28.58■■■□□ 2.17
CSB-PGBD3P0DP91 AC093787.1-201ENST00000450396 207 ntBASIC28.58■■■□□ 2.17
CSB-PGBD3P0DP91 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CSB-PGBD3P0DP91 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
CSB-PGBD3P0DP91 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CSB-PGBD3P0DP91 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CSB-PGBD3P0DP91 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 EEF1DP3-203ENST00000566025 782 ntBASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 AC016405.3-201ENST00000607710 860 ntBASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 AC008694.1-202ENST00000636953 945 ntBASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CSB-PGBD3P0DP91 PRORSD1P-201ENST00000295112 541 ntBASIC28.56■■■□□ 2.16
CSB-PGBD3P0DP91 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC28.56■■■□□ 2.16
CSB-PGBD3P0DP91 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CSB-PGBD3P0DP91 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CSB-PGBD3P0DP91 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
CSB-PGBD3P0DP91 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC28.56■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms